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why you not filter the data firstly? #268

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hanguojun007 opened this issue Mar 9, 2022 · 1 comment
Open

why you not filter the data firstly? #268

hanguojun007 opened this issue Mar 9, 2022 · 1 comment

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@hanguojun007
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why you not filter the data firstly?
i want get more transcripts, but some can't maping , for example: the /GENCODE/mouse/gencode.vM28.transcripts.fa , it get 40000s, but half is 0. so the q.value is very big finally.
i have to use DESeq.
@Yenaled
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Yenaled commented Mar 30, 2022

We do have a filter to improve false discovery rate: https://rdrr.io/github/pachterlab/sleuth/man/sleuth_prep.html

(see the filter options there, the default is the basic_filter)

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@Yenaled @hanguojun007