Name		Name	Last commit message	Last commit date
parent directory ..
README.md		README.md
Snakefile		Snakefile
chrom.txt		chrom.txt
reads_1.fastq.gz		reads_1.fastq.gz
reads_2.fastq.gz		reads_2.fastq.gz
sc_reads_1.fastq.gz		sc_reads_1.fastq.gz
sc_reads_2.fastq.gz		sc_reads_2.fastq.gz
transcripts.fasta.gz		transcripts.fasta.gz
transcripts.gtf.gz		transcripts.gtf.gz

README.md

test data set

Here you will find a small test data set to ensure that kallisto is working properly. The contents are:

transcripts.fasta.gz: a gzip compressed transcriptome
reads_X.fastq.gz: gzip compressed "left" and "right" reads
Snakefile: a sample snakemake file (not required for running kallisto)