{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":26562905,"defaultBranch":"master","name":"kallisto","ownerLogin":"pachterlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-11-13T00:27:48.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/10359946?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722027680.0","currentOid":""},"activityList":{"items":[{"before":"3d34d083aa1b75ff05d27181174345f56987e4b7","after":"a6f36f294965e584307ab740e1bf6b34eaeedd22","ref":"refs/heads/gh-pages","pushedAt":"2024-07-26T18:32:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"add --long","shortMessageHtmlLink":"add --long"}},{"before":"010907cfe041a8cdc89aeb28baf24cf6899faea8","after":"fa01edd1d426b2b89d3b87169a08bae58c85dece","ref":"refs/heads/master","pushedAt":"2024-07-20T19:07:27.000Z","pushType":"pr_merge","commitsCount":122,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Merge pull request #448 from pachterlab/devel\n\nlr-kallisto","shortMessageHtmlLink":"Merge pull request #448 from pachterlab/devel"}},{"before":"98ec3021e46b89224d768f3d3cad816807355381","after":"5ef335b7f1ce7dd27247ea7eed869e7c5e857b05","ref":"refs/heads/devel","pushedAt":"2024-07-13T10:10:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Pass index.k to all plaintext_aux()","shortMessageHtmlLink":"Pass index.k to all plaintext_aux()"}},{"before":null,"after":"c42c850f79d2337a27ae24a1b29b583bc49cbbd2","ref":"refs/heads/revert-441-master","pushedAt":"2024-05-16T05:11:43.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Revert \"Update batch processing length normalization to match non-batch processing length normalization\"","shortMessageHtmlLink":"Revert \"Update batch processing length normalization to match non-bat…"}},{"before":"2bdd636edc5a2a6f41d297412f2a263ddfbc923b","after":"98ec3021e46b89224d768f3d3cad816807355381","ref":"refs/heads/devel","pushedAt":"2024-05-16T05:07:45.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Merge pull request #441 from bound-to-love/master\n\nUpdate batch processing length normalization to match non-batch processing length normalization","shortMessageHtmlLink":"Merge pull request #441 from bound-to-love/master"}},{"before":"2166a3c9e71a4b687b67ddffed32142e47be60c3","after":"2bdd636edc5a2a6f41d297412f2a263ddfbc923b","ref":"refs/heads/devel","pushedAt":"2024-05-06T19:12:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"fix help menu","shortMessageHtmlLink":"fix help menu"}},{"before":"f00ea4627c984e38c78b2721ec84761208f8a12d","after":"2166a3c9e71a4b687b67ddffed32142e47be60c3","ref":"refs/heads/devel","pushedAt":"2024-05-05T01:06:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"bump version","shortMessageHtmlLink":"bump version"}},{"before":"593458930f8264a833b5e78216d8dd62a7914cd4","after":"f00ea4627c984e38c78b2721ec84761208f8a12d","ref":"refs/heads/devel","pushedAt":"2024-05-05T01:01:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"add cmake options to disable bifrost architecture-specific code","shortMessageHtmlLink":"add cmake options to disable bifrost architecture-specific code"}},{"before":"a3da8d55cf8d0b8af04c4dd4410f5b52daab6080","after":"593458930f8264a833b5e78216d8dd62a7914cd4","ref":"refs/heads/devel","pushedAt":"2024-05-04T23:36:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"fix generating unnecessary output in quant-tcc","shortMessageHtmlLink":"fix generating unnecessary output in quant-tcc"}},{"before":"65a989c9c6ba902d1b64ce230e9c75985472ce77","after":"a3da8d55cf8d0b8af04c4dd4410f5b52daab6080","ref":"refs/heads/devel","pushedAt":"2024-05-04T23:25:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"fix bug when writing index.saved with a d-list","shortMessageHtmlLink":"fix bug when writing index.saved with a d-list"}},{"before":"53296686dee8a73639c499942dc7a9109bdb4aeb","after":"65a989c9c6ba902d1b64ce230e9c75985472ce77","ref":"refs/heads/devel","pushedAt":"2024-05-04T23:02:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Allow adjusting MAX_KMER_SIZE in cmake\n\ncmake .. -DMAX_KMER_SIZE=64","shortMessageHtmlLink":"Allow adjusting MAX_KMER_SIZE in cmake"}},{"before":"abd87bf4dad1a0379f485c4d2898a987b190d3c6","after":"53296686dee8a73639c499942dc7a9109bdb4aeb","ref":"refs/heads/devel","pushedAt":"2024-05-04T18:13:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"some fixes in the codebase","shortMessageHtmlLink":"some fixes in the codebase"}},{"before":"010907cfe041a8cdc89aeb28baf24cf6899faea8","after":"abd87bf4dad1a0379f485c4d2898a987b190d3c6","ref":"refs/heads/devel","pushedAt":"2024-05-04T17:26:37.000Z","pushType":"pr_merge","commitsCount":108,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Merge pull request #436 from bound-to-love/master\n\nlr-kallisto, adding long read pseudoalignment and quantification options","shortMessageHtmlLink":"Merge pull request #436 from bound-to-love/master"}},{"before":"010907cfe041a8cdc89aeb28baf24cf6899faea8","after":null,"ref":"refs/heads/development","pushedAt":"2024-05-04T17:25:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"}},{"before":null,"after":"010907cfe041a8cdc89aeb28baf24cf6899faea8","ref":"refs/heads/devel","pushedAt":"2024-05-04T17:25:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"update limits","shortMessageHtmlLink":"update limits"}},{"before":"4ff3fdc36abf8645c9d9125350f1d932bc08c907","after":null,"ref":"refs/heads/devel","pushedAt":"2024-05-04T17:25:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"}},{"before":null,"after":"4ff3fdc36abf8645c9d9125350f1d932bc08c907","ref":"refs/heads/devel_old","pushedAt":"2024-05-04T17:25:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"update version number","shortMessageHtmlLink":"update version number"}},{"before":null,"after":"010907cfe041a8cdc89aeb28baf24cf6899faea8","ref":"refs/heads/development","pushedAt":"2024-05-03T16:01:10.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"update limits","shortMessageHtmlLink":"update limits"}},{"before":"f77d924931d3c4d2758d134af0542ac23dd69fff","after":"f8db1e9583f16cb72ae230530542f744df1ce6be","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T17:49:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a3983e5852ad7ef6eb9d7635401eb2ee1847b2e7","after":"f77d924931d3c4d2758d134af0542ac23dd69fff","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T17:48:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Allow overhang=1 with --aa","shortMessageHtmlLink":"Allow overhang=1 with --aa"}},{"before":"1c4678fbdebe773a9e54eafe7f8dc152b68f40c6","after":"a3983e5852ad7ef6eb9d7635401eb2ee1847b2e7","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T03:28:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Change code from cfc to max ham code","shortMessageHtmlLink":"Change code from cfc to max ham code"}},{"before":"23963fe140b3aa85d17677b3e575616526908734","after":"1c4678fbdebe773a9e54eafe7f8dc152b68f40c6","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T03:19:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Change code from cfc to max ham code","shortMessageHtmlLink":"Change code from cfc to max ham code"}},{"before":"010907cfe041a8cdc89aeb28baf24cf6899faea8","after":"23963fe140b3aa85d17677b3e575616526908734","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T03:13:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":null,"after":"010907cfe041a8cdc89aeb28baf24cf6899faea8","ref":"refs/heads/max_ham_code","pushedAt":"2023-12-11T03:11:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"update limits","shortMessageHtmlLink":"update limits"}},{"before":"fe15685fe7a1bb0644501981e5db75b78a333367","after":"9b9de4bb16b1b3ab24fd5cae4203559ddfaa042e","ref":"refs/heads/dlist_discard_ambiguities","pushedAt":"2023-12-10T03:02:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"fe15685fe7a1bb0644501981e5db75b78a333367","after":null,"ref":"refs/heads/new2","pushedAt":"2023-12-10T03:01:19.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"}},{"before":null,"after":"fe15685fe7a1bb0644501981e5db75b78a333367","ref":"refs/heads/dlist_discard_ambiguities","pushedAt":"2023-12-10T03:01:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lauraluebbert","name":"Laura Luebbert, Ph.D.","path":"/lauraluebbert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56094636?s=80&v=4"},"commit":{"message":"sync","shortMessageHtmlLink":"sync"}},{"before":"627f8223596181aa6cf15ccd05e6c4e22f77ad7e","after":"010907cfe041a8cdc89aeb28baf24cf6899faea8","ref":"refs/heads/master","pushedAt":"2023-11-02T00:40:50.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"update limits","shortMessageHtmlLink":"update limits"}},{"before":"34e5814a2030c40fb5dddcac55601077a8b997e5","after":"627f8223596181aa6cf15ccd05e6c4e22f77ad7e","ref":"refs/heads/master","pushedAt":"2023-11-01T23:40:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"update limits","shortMessageHtmlLink":"update limits"}},{"before":"5380a77e4d08acbdae9c35b57ba4b76615a5d7db","after":"34e5814a2030c40fb5dddcac55601077a8b997e5","ref":"refs/heads/master","pushedAt":"2023-11-01T12:46:19.000Z","pushType":"pr_merge","commitsCount":48,"pusher":{"login":"Yenaled","name":"Delaney Sullivan","path":"/Yenaled","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15304682?s=80&v=4"},"commit":{"message":"Merge pull request #409 from pachterlab/devel\n\nDevel","shortMessageHtmlLink":"Merge pull request #409 from pachterlab/devel"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEik6cjwA","startCursor":null,"endCursor":null}},"title":"Activity · pachterlab/kallisto"}