Commits

Commits on Jun 27, 2019

Merge pull request #4 from oxfordmmm/variant-call
Fan Yang
committedJun 27, 2019
update dag graph
Fan Yang
committedJun 27, 2019
gzip fasta file
Fan Yang
committedJun 27, 2019
Merge pull request #3 from oxfordmmm/variant-call
Fan Yang
committedJun 27, 2019

Commits on Jun 26, 2019

Add flow graph
Fan Yang
committedJun 26, 2019
Update filtering and consensus
Fan Yang
committedJun 26, 2019
Move pyscript to bini
Fan Yang
committedJun 26, 2019

Commits on Jun 25, 2019

Add mask reference
Fan Yang
committedJun 25, 2019

Commits on Jun 24, 2019

update variant call
Fan Yang
committedJun 24, 2019

Commits on Jun 6, 2019

gzip fasta output
Fan Yang
committedJun 6, 2019

Commits on Jun 5, 2019

Merge conflict
Fan Yang
committedJun 5, 2019
Update consensus process with dvolk docker
Fan Yang
committedJun 5, 2019

Commits on May 23, 2019

output consesus fasta
Fan Yang
committedMay 23, 2019

Commits on May 20, 2019

update output and config
dvolk
committedMay 20, 2019

Commits on May 17, 2019

Merge pull request #2 from oxfordmmm/btb-oxford
Fan Yang
committedMay 17, 2019
Add memory usage
Fan Yang
committedMay 17, 2019

Commits on May 16, 2019

Merge pull request #1 from oxfordmmm/btb-oxford
Fan Yang
committedMay 16, 2019

Commits on May 15, 2019

update variant call
Fan Yang
committedMay 15, 2019
Update docker version
Fan Yang
committedMay 15, 2019
Update output of kraen2
Fan Yang
committedMay 15, 2019

Commits on May 8, 2019

Add consensus calling
Fan Yang
committedMay 8, 2019
Add kraken2
Fan Yang
committedMay 8, 2019
Update docker version
Fan Yang
committedMay 8, 2019
Add adaptors file
Fan Yang
committedMay 8, 2019
Remove duplicate results
Fan Yang
committedMay 8, 2019

Commits on May 7, 2019

Make docker exclude kraken and consensus
Fan Yang
committedMay 7, 2019

Commits on May 3, 2019

More rebalancing and removing redundant output
ellisrichardj
committedMay 3, 2019
vcfutils no longer required
ellisrichardj
committedMay 3, 2019
Remove superseded scripts
ellisrichardj
committedMay 3, 2019
change varibale notaion from ! to $ in script block
ellisrichardj
committedMay 3, 2019
change point at which trimmed reads are removed
ellisrichardj
committedMay 3, 2019
Merge branch 'master' of https://github.com/ellisrichardj/BovTB-nf
ellisrichardj
committedMay 3, 2019
change to latest commit of bcftools
ellisrichardj
committedMay 3, 2019

Commits on May 2, 2019

Changed to new release of kraken2
ellisrichardj
committedMay 2, 2019

Commits on May 1, 2019

minor typographical corrections
ellisrichardj
committedMay 1, 2019