Commits

Commits on Jul 9, 2024

[pre-commit.ci] pre-commit autoupdate (#301 )
pre-commit-ci[bot]
committedJul 9, 2024

Commits on Jul 2, 2024

REL v0.4.10
BorisMuzellec
committedJul 2, 2024
MAINT cast counts to int when initialising a DeseqDataSet from an anndata object (#299 )
BorisMuzellec
committedJul 2, 2024
ENH Remove count DataFrame from calculate_cooks and add control_genesto fit_size_factors (#292 )

committedJul 2, 2024
[pre-commit.ci] pre-commit autoupdate (#298 )
pre-commit-ci[bot]
committedJul 2, 2024

Commits on Jul 1, 2024

DOC fix text format in DeseqStats docstring (#297 )
BorisMuzellec
committedJul 1, 2024
[pre-commit.ci] pre-commit autoupdate (#295 )
pre-commit-ci[bot]
committedJul 1, 2024

Commits on Jun 13, 2024

DOC: specify what happens if n_cpus and inference are set (#294 )
umarteauowkin
committedJun 13, 2024
do not overwrite if n_cpus is None (#293 )
yihming
committedJun 13, 2024

Commits on Jun 11, 2024

ENH: Poscount implementation & diag(XXT) optimization (#284 )

asistradition
and
pre-commit-ci[bot]
committedJun 11, 2024
[pre-commit.ci] pre-commit autoupdate (#290 )
pre-commit-ci[bot]
committedJun 11, 2024

Commits on Jun 10, 2024

summary function uses quiet to print (#286 )
yihming
committedJun 10, 2024
[pre-commit.ci] pre-commit autoupdate (#285 )
pre-commit-ci[bot]
committedJun 10, 2024
chore: update code owners (#289 )
mandreux-owkin
committedJun 10, 2024

Commits on May 30, 2024

fix : enable vst be used "blindly" and to fit its own dispersion (#268 )

committedMay 30, 2024

Commits on May 28, 2024

[pre-commit.ci] pre-commit autoupdate (#283 )
pre-commit-ci[bot]
committedMay 28, 2024

Commits on May 27, 2024

MAINT Replace np.NaN with np.nan -> numpy 2.0 compat (#282 )
Zethson
committedMay 27, 2024

Commits on May 21, 2024

BUG initialize beta_init when the design matrix is not full rank (#281 )
BorisMuzellec
committedMay 21, 2024

Commits on May 14, 2024

[pre-commit.ci] pre-commit autoupdate (#279 )
pre-commit-ci[bot]
committedMay 14, 2024

Commits on May 7, 2024

[pre-commit.ci] pre-commit autoupdate (#278 )
pre-commit-ci[bot]
committedMay 7, 2024

Commits on Apr 30, 2024

[pre-commit.ci] pre-commit autoupdate (#277 )
pre-commit-ci[bot]
committedApr 30, 2024

Commits on Apr 25, 2024

REL v0.4.9
BorisMuzellec
committedApr 25, 2024
BUG update genewise dispersions and fitted dispersions of refitted genes (#274 )
BorisMuzellec
committedApr 25, 2024

Commits on Apr 23, 2024

[pre-commit.ci] pre-commit autoupdate (#273 )
pre-commit-ci[bot]
committedApr 23, 2024

Commits on Apr 16, 2024

[pre-commit.ci] pre-commit autoupdate (#269 )
pre-commit-ci[bot]
committedApr 16, 2024

Commits on Apr 12, 2024

ENH add adapt = False (prior_scale=1) option to lfc_shrink() (#267 )

awalsh17
and
BorisMuzellec
committedApr 12, 2024

Commits on Apr 2, 2024

DOC fix latex display in sphinx doc (#266 )

tanguy-marchand
and
BorisMuzellec
committedApr 2, 2024
[pre-commit.ci] pre-commit autoupdate (#265 )
pre-commit-ci[bot]
committedApr 2, 2024

Commits on Mar 26, 2024

REL v0.4.8
BorisMuzellec
committedMar 26, 2024
[pre-commit.ci] pre-commit autoupdate (#261 )
pre-commit-ci[bot]
committedMar 26, 2024

Commits on Mar 25, 2024

BUG add continuous_factors argument to sub_dds (#260 )
BorisMuzellec
committedMar 25, 2024

Commits on Mar 21, 2024

BUG return output with same dimensions as input with mean disp fuction (#253 )
BorisMuzellec
committedMar 21, 2024

Commits on Mar 19, 2024

[pre-commit.ci] pre-commit autoupdate (#257 )
pre-commit-ci[bot]
committedMar 19, 2024

Commits on Mar 15, 2024

MAINT upgrade python version in docs and readme (#256 )
jeandut
committedMar 15, 2024

Commits on Mar 13, 2024

[pre-commit.ci] pre-commit autoupdate (#250 )
pre-commit-ci[bot]
committedMar 13, 2024