{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"methphaser","owner":"treangenlab","isFork":false,"description":"MethPhaser: methylation-based haplotype phasing of human genomes","allTopics":["methylation","bioinformatics-tool","haplotype-blocks"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":7,"starsCount":37,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T16:31:04.404Z"}},{"type":"Public","name":"InfA-amplicon","owner":"treangenlab","isFork":false,"description":"Amplicon sequencing of influenza A","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T17:30:32.395Z"}},{"type":"Public","name":"lemur","owner":"treangenlab","isFork":false,"description":"Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets ","allTopics":["metagenomics","metagenomic-analysis","metagenomic-classification","long-reads","taxonomic-classification","long-read-sequencing","taxonomic-profiling"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":16,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,14,16,2,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T03:59:41.411Z"}},{"type":"Public","name":"Olivar","owner":"treangenlab","isFork":false,"description":"Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing","allTopics":["bioinformatics","amplicon-sequencing"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":15,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T07:33:25.925Z"}},{"type":"Public","name":"magnet","owner":"treangenlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T16:14:56.221Z"}},{"type":"Public","name":"crykey_analysis_scripts","owner":"treangenlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-02T16:39:48.319Z"}},{"type":"Public","name":"wasterwater_arg_metagenomics","owner":"treangenlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-08T19:13:55.006Z"}},{"type":"Public","name":"rhea","owner":"treangenlab","isFork":false,"description":"Recognizing HGT Events in Assemblies","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":0,"license":"MIT License","participation":[0,2,1,0,4,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,7,2,3,7,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T20:31:24.716Z"}},{"type":"Public","name":"radmicrobes","owner":"treangenlab","isFork":false,"description":"2023 RAD microbes boot camp","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-18T17:51:37.871Z"}},{"type":"Public","name":"crykey","owner":"treangenlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-20T23:13:29.068Z"}},{"type":"Public","name":"emu","owner":"treangenlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":26,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-03T10:51:46.433Z"}},{"type":"Public","name":"komb","owner":"treangenlab","isFork":false,"description":"KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.","allTopics":["metagenomics","metagenomic-analysis","anomaly-detection","metagenomic-pipeline","k-core-decomposition","short-read-sequencing"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":1,"starsCount":5,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-28T16:54:58.661Z"}}],"repositoryCount":12,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"treangenlab repositories"}