{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"evidence_datasource_parsers","owner":"opentargets","isFork":false,"description":"script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":6,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-15T12:30:10.713Z"}},{"type":"Public","name":"curation","owner":"opentargets","isFork":false,"description":"mappings used by the open targets platform to integrate data sources","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T13:26:07.548Z"}},{"type":"Public","name":"platform-input-support","owner":"opentargets","isFork":false,"description":"Open Targets Platform input support project.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":0,"starsCount":5,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T16:26:55.750Z"}},{"type":"Public","name":"gentroutils","owner":"opentargets","isFork":false,"description":"Utility CLI tools for gentropy orchestration","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T15:28:46.144Z"}},{"type":"Public","name":"json_schema","owner":"opentargets","isFork":false,"description":"Open Targets target-disease association schema","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":10,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T10:43:01.737Z"}},{"type":"Public","name":"OnToma","owner":"opentargets","isFork":false,"description":"Map your disease and phenotype terms to the Open Targets platform ontology","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":19,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-07T13:29:15.659Z"}},{"type":"Public","name":"orchestration","owner":"opentargets","isFork":false,"description":"Open Targets pipeline orchestration layer","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-15T13:00:04.921Z"}},{"type":"Public","name":"gentropy-input-support","owner":"opentargets","isFork":false,"description":"Non-Spark preprocessing for datasource ingestion","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-20T12:39:43.939Z"}},{"type":"Public","name":"stopReasons","owner":"opentargets","isFork":false,"description":"Analysis on stop reasons","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-17T15:17:15.697Z"}},{"type":"Public","name":"experimental_programme","owner":"opentargets","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T12:48:35.431Z"}},{"type":"Public","name":"genetics-loadtests","owner":"opentargets","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-09T18:16:20.154Z"}},{"type":"Public","name":"timeseries","owner":"opentargets","isFork":false,"description":"Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T08:43:51.005Z"}},{"type":"Public","name":"ot-release-metrics","owner":"opentargets","isFork":false,"description":"Collection and visualisation of Open Targets Platform release metrics.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T16:41:33.115Z"}},{"type":"Public","name":"genetics-gold-standards","owner":"opentargets","isFork":false,"description":"GWAS gold standards repository","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":29,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-23T15:57:35.824Z"}},{"type":"Public","name":"target_engine","owner":"opentargets","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-13T20:04:04.839Z"}},{"type":"Public","name":"validator","owner":"opentargets","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-24T00:37:59.478Z"}},{"type":"Public","name":"QC_sumstat","owner":"opentargets","isFork":false,"description":"Quality control tests on summary statistics data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-19T17:14:31.727Z"}},{"type":"Public","name":"genetics-l2g-scoring","owner":"opentargets","isFork":false,"description":"Locus-to-gene scoring pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":10,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-13T11:12:44.437Z"}},{"type":"Public","name":"genetics_data_revision","owner":"opentargets","isFork":false,"description":"This repository hosts the code to adapt the genetics output data to their data and schema iterations","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-13T10:38:15.788Z"}},{"type":"Public","name":"genetics-finemapping","owner":"opentargets","isFork":false,"description":"Fine-mapping pipeline for Open Targets Genetics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":0,"starsCount":24,"forksCount":8,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-06T11:20:29.046Z"}},{"type":"Public","name":"genetics-v2d-data","owner":"opentargets","isFork":false,"description":"Variant to disease dataset workflows for Open Targets Genetics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":10,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-23T10:10:29.841Z"}},{"type":"Public","name":"genetics-backend","owner":"opentargets","isFork":false,"description":"QC, spin VMs, load data into DBs, create LUTs and other fun backend stuff we need to do to spin <a href=\"https://genetics.opentargets.org\" rel=\"nofollow\">https://genetics.opentargets.org</a>","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":6,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-15T13:45:58.087Z"}},{"type":"Public","name":"genetics-variant-annotation","owner":"opentargets","isFork":false,"description":"Workflow to produce variant index annotation for Open Targets Genetics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-11T08:54:04.247Z"}},{"type":"Public","name":"genetics-colocalisation","owner":"opentargets","isFork":false,"description":"Colocalisation pipeline for Open Targets Genetics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":15,"forksCount":8,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-08T22:05:02.673Z"}},{"type":"Public","name":"genetics-input-support","owner":"opentargets","isFork":false,"description":"Open Targets Genetics input support project.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-19T16:22:38.078Z"}},{"type":"Public","name":"genetics-sumstat-harmoniser","owner":"opentargets","isFork":false,"description":"Harmonise GWAS summary statistics against a reference VCF","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":37,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-15T12:41:52.592Z"}},{"type":"Public","name":"target_safety","owner":"opentargets","isFork":false,"description":"Target safety pipeline in Open Targets","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-15T12:40:54.751Z"}},{"type":"Public","name":"expression_hierarchy","owner":"opentargets","isFork":false,"description":"Utility to convert gxa hierarchy files to JSON","allTopics":["data-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-15T08:58:25.186Z"}},{"type":"Public","name":"target_safety_data_pipeline","owner":"opentargets","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-02T10:02:30.141Z"}},{"type":"Public","name":"chembl-es-mappings","owner":"opentargets","isFork":false,"description":"Helper scripts to ensure that indexes queried by PIS have not changed. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-02T09:34:01.352Z"}}],"repositoryCount":30,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"opentargets repositories"}