{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"refscan","owner":"microbiomedata","isFork":false,"description":"Command-line program that scans NMDC database for referential integrity violations","allTopics":["mongodb","referential-integrity","linkml"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-05T06:05:05.394Z"}},{"type":"Public","name":"nmdc_notebooks","owner":"microbiomedata","isFork":false,"description":"Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":3,"starsCount":5,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T23:45:25.670Z"}},{"type":"Public","name":"nmdc-edge","owner":"microbiomedata","isFork":false,"description":"Web-based interface to the NMDC EDGE platform","allTopics":["mongo","express","node","reactjs","cromwell"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":1,"issueCount":75,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T23:37:51.724Z"}},{"type":"Public","name":"berkeley-schema-fy24","owner":"microbiomedata","isFork":true,"description":"A fork of the nmdc-schema, for refactoring based on Monterey insights","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":10,"issueCount":0,"starsCount":6,"forksCount":8,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T21:00:22.402Z"}},{"type":"Public","name":"docs","owner":"microbiomedata","isFork":false,"description":"User-facing, web-based documentation about the NMDC","allTopics":["documentation","sphinx"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-04T07:27:40.212Z"}},{"type":"Public","name":"nmdc-aggregator","owner":"microbiomedata","isFork":false,"description":"Scripts that periodically aggregate data related to KEGG search","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":6,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T20:54:06.105Z"}},{"type":"Public","name":"nmdc-runtime","owner":"microbiomedata","isFork":false,"description":"Runtime system for NMDC data management and orchestration","allTopics":["workflow","nmdc","microbiomedata"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":13,"issueCount":104,"starsCount":4,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T19:04:06.361Z"}},{"type":"Public","name":"nmdc-server","owner":"microbiomedata","isFork":false,"description":"Data portal client and server for NMDC.","allTopics":["nmdc"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":14,"issueCount":156,"starsCount":8,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T18:27:12.995Z"}},{"type":"Public","name":"nmdc_automation","owner":"microbiomedata","isFork":false,"description":"Prototype automation","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":42,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-31T00:13:09.033Z"}},{"type":"Public","name":"issues","owner":"microbiomedata","isFork":false,"description":"public repo for issues related to NMDC work","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":330,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-30T22:28:20.565Z"}},{"type":"Public","name":"submission-schema","owner":"microbiomedata","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":45,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T19:29:28.427Z"}},{"type":"Public","name":"metaPro","owner":"microbiomedata","isFork":false,"description":"Workflow for meta-proteomics analysis","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":8,"starsCount":6,"forksCount":3,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T19:25:04.335Z"}},{"type":"Public","name":"nmdc-field-notes","owner":"microbiomedata","isFork":false,"description":"Mobile app for metadata collection on the go","allTopics":["react","ionic","capacitor"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":1,"issueCount":26,"starsCount":1,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-28T18:19:51.330Z"}},{"type":"Public","name":"metaMAGs","owner":"microbiomedata","isFork":false,"description":"Workflow for metagenome assembled genomes generation. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T22:12:58.321Z"}},{"type":"Public","name":"NMDC_documentation","owner":"microbiomedata","isFork":false,"description":"Document workflows, schemas, and portal","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":21,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T18:54:17.848Z"}},{"type":"Public","name":"nmdc-schema","owner":"microbiomedata","isFork":false,"description":"National Microbiome Data Collaborative (NMDC) unified data model","allTopics":["metadata","schema","genomics","standards","samples","proteomics","metabolomics","microbiome","transcriptomics","fair-data","ecoinformatics","nmdc","mixs","linkml","microbiomedata"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":28,"issueCount":372,"starsCount":27,"forksCount":8,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T23:58:25.931Z"}},{"type":"Public","name":"metadata-for-user-facility-template-transformations","owner":"microbiomedata","isFork":false,"description":"CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":17,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T19:29:40.126Z"}},{"type":"Public","name":"ReadsQC","owner":"microbiomedata","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":1,"issueCount":3,"starsCount":3,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T17:31:44.382Z"}},{"type":"Public","name":"metaT","owner":"microbiomedata","isFork":false,"description":"Metatranscriptomics workflow","allTopics":["transcriptomics","metatranscriptomics","workflow"],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":2,"issueCount":9,"starsCount":4,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T17:14:13.125Z"}},{"type":"Public","name":"metaT_ReadsQC","owner":"microbiomedata","isFork":false,"description":"Workflow for metatranscriptome quality control","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T16:23:43.408Z"}},{"type":"Public","name":"metaT_ReadCounts","owner":"microbiomedata","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T17:40:27.571Z"}},{"type":"Public archive","name":"nmdc-datasets","owner":"microbiomedata","isFork":false,"description":"Datasets that are stored in the central NMDC database.","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-19T16:38:54.085Z"}},{"type":"Public","name":"metaMS","owner":"microbiomedata","isFork":false,"description":"GC-MS Based Metabolomics Workflow","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":16,"starsCount":4,"forksCount":0,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T19:02:43.785Z"}},{"type":"Public","name":"mg_annotation","owner":"microbiomedata","isFork":false,"description":"Metagenome Annotation Workflow","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":2,"issueCount":0,"starsCount":3,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-09T19:33:27.353Z"}},{"type":"Public","name":"metaT_Assembly","owner":"microbiomedata","isFork":false,"description":"workflow for metatranscriptome assembly","allTopics":[],"primaryLanguage":{"name":"WDL","color":"#42f1f4"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-25T23:21:41.758Z"}},{"type":"Public","name":"enviroMS","owner":"microbiomedata","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":4,"forksCount":0,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-24T23:01:51.082Z"}},{"type":"Public","name":"ReadbasedAnalysis","owner":"microbiomedata","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-23T18:43:44.133Z"}},{"type":"Public","name":"SRA_submit","owner":"microbiomedata","isFork":false,"description":"ncbi export ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T21:51:56.930Z"}},{"type":"Public","name":"workflow_documentation","owner":"microbiomedata","isFork":false,"description":"This repository contains the documentation template for the NDMC workflows. ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T18:39:35.490Z"}},{"type":"Public archive","name":"DataHarmonizer","owner":"microbiomedata","isFork":true,"description":"Our dev interface is available via github pages:","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":25,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-12T21:57:24.045Z"}}],"repositoryCount":75,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"microbiomedata repositories"}