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MyGene script should not change the symbol of the gene while parsing #139

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const8ine opened this issue Mar 28, 2023 · 0 comments
Open

MyGene script should not change the symbol of the gene while parsing #139

const8ine opened this issue Mar 28, 2023 · 0 comments
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good first issue Good for newcomers

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const8ine commented Mar 28, 2023 •
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In this project we have console scripts for parsing and complementing collected data.

Add a statement for the MyGene script not to change the symbol of the gene if it is already set for the gene. The symbol field may be changed after by biologists.

This is necessary because for some genes we changed the symbol from a synonym to HGNC and we do not know which option is used in MyGene for a gene with this NCBI id.

The script: scripts/human_orthologs/dataset_parser.py

This issue is transferred from a Jira task OG-934
@const8ine const8ine added the good first issue Good for newcomers label Mar 28, 2023
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