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Issues: nf-core/test-datasets

Modules test-data task force master list
#1243 opened Jul 2, 2024 by SPPearce
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Issues list

Test data for xenium pipeline - spatialxe
#1345 opened Oct 11, 2024 by khersameesh24 updated Oct 11, 2024
@khersameesh24
Rearrange and rename the delete_me folder
#1245 opened Jul 2, 2024 by SPPearce updated Sep 2, 2024
2
Very carefully delete any branches that are unnecessary (especially ones that have already been merged)
#1249 opened Jul 2, 2024 by SPPearce updated Sep 2, 2024
3
Is there a better way to provide test-data for modules than we currently have, with the two stage process.
#1251 opened Jul 2, 2024 by SPPearce updated Aug 30, 2024
1
Organise and document the files that we currently have better, rather than one massive README with single lines of text.
#1247 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
aws s3 links
#1252 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
Modules test-data task force master list
#1243 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
If we are not allowing links to external git files, then we need to deal with all those files
#1250 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
1
Set up a GitHub bot to automatically post links to new PRs into the #request-review or #test-datasets slack channels.
#1244 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
Generate a page on the website to be able to view the current test data
#1248 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
Determine what we want to do with tools with very specific test data files
#1246 opened Jul 2, 2024 by SPPearce updated Jul 2, 2024
Need testdata for mcmicro-celesta
#1131 opened Mar 19, 2024 by LukasHats updated Mar 19, 2024
Test data required for testing scimap/spatiallda module imaging
#1130 opened Mar 19, 2024 by chiarasch updated Mar 19, 2024
@migueLib @chiarasch
Request to add ONT-Amplicon seq for SARS-CoV-2:Wastewater
#1087 opened Feb 7, 2024 by arunbodd updated Feb 23, 2024
@arunbodd
CAT - Contig Annotation Tool custom database
#1102 opened Feb 16, 2024 by maxibor updated Feb 16, 2024
1
What should we do with docs/ADD_NEW_DATA.md and docs/USE_EXISTING_DATA.md on pipeline branches?
#1069 opened Jan 17, 2024 by Aratz updated Jan 17, 2024
Add new test data for modkit_pileup
#1050 opened Nov 29, 2023 by Michal-Babins updated Nov 29, 2023
Homo sapiens Genome.gtf test-dataset is invalid
#1028 opened Oct 21, 2023 by JackCurragh updated Oct 21, 2023
add a new dataset for est-sfs
#1019 opened Oct 17, 2023 by BioInf2305 updated Oct 17, 2023
@BioInf2305
[taxprofiler branch] Add new taxprofiler sourmash db
#1018 opened Oct 16, 2023 by vmikk updated Oct 16, 2023
@vmikk
Use version tags on branches
#993 opened Aug 23, 2023 by edmundmiller updated Aug 24, 2023
1
Use git-lfs
#992 opened Aug 18, 2023 by edmundmiller updated Aug 18, 2023
Pipedreams
#991 opened Aug 18, 2023 by edmundmiller updated Aug 18, 2023
4 tasks
Add new test data for sammyseq
#832 opened Mar 29, 2023 by daisymut updated Mar 29, 2023
7 of 9 tasks
1
@daisymut
Add cyano nucleotide taxonomy to phyloplace test data
#814 opened Mar 27, 2023 by erikrikarddaniel updated Mar 27, 2023
@erikrikarddaniel
ProTip! Adding no:label will show everything without a label.