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Update test paths for nf-core/modules to new(er) format #1196

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adamrtalbot opened this issue Jan 17, 2024 · 2 comments
Closed

Update test paths for nf-core/modules to new(er) format #1196

adamrtalbot opened this issue Jan 17, 2024 · 2 comments
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enhancement nf-core/modules
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nf-test

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@adamrtalbot
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adamrtalbot commented Jan 17, 2024 •
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Description of feature

Recently we replaced some base paths in nf-core/modules for nf-core/fetchngs. See here: https://github.com/nf-core/modules/pull/4723/files

We need to do the same for the nf-core/rnaseq modules and subworkflows.

nf-core/modules

Done:

In progress:

To do:

  • tximeta/tximport
  • umitools/prepareforrsem
  • umitools/dedup

nf-core/subworkflows

Done:

In progress:

To do:
None

Related

For an equivalent for local modules see here: #1133
For an equivalent for local subworkflows see here: #1134
@adamrtalbot adamrtalbot added this to the nf-test milestone Jan 17, 2024
@adamrtalbot adamrtalbot mentioned this issue Feb 23, 2024
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@adamrtalbot
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Status update - remaining PRs are OK but due to the self-hosted S3 issue aren't passing.

@adamrtalbot
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Done (I think, @maxulysse?)

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enhancement nf-core/modules
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