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port gridss/gridss to nf-test #5933

Merged
merged 12 commits into from
Jul 12, 2024
Merged

port gridss/gridss to nf-test #5933

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98409eb
port
famosab Jul 8, 2024
29e837c
remove pytest files
famosab Jul 8, 2024
bc4745c
fix meta
famosab Jul 8, 2024
588e3fc
Update meta.yml
famosab Jul 8, 2024
125a0eb
Merge branch 'master' into port-gridss-to-nf-test
maxulysse Jul 8, 2024
19ead91
fix indentation
famosab Jul 9, 2024
a8420fd
Merge branch 'master' into port-gridss-to-nf-test
famosab Jul 9, 2024
3d05613
update test with bam plugin
famosab Jul 9, 2024
08f1e14
fix indents, try other test
famosab Jul 9, 2024
130f592
remove --assembly flag for now
famosab Jul 10, 2024
d076f8d
Merge branch 'master' into port-gridss-to-nf-test
famosab Jul 10, 2024
175c7d0
Merge branch 'master' into port-gridss-to-nf-test
famosab Jul 10, 2024
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update test with bam plugin
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@famosab
famosab committed Jul 9, 2024
commit 3d0561357f17575691c53ba448298e6d54c8c622
4 changes: 2 additions & 2 deletions modules/nf-core/gridss/gridss/tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -109,8 +109,8 @@ nextflow_process {
assertAll(
{ assert process.success },
{ assert snapshot(
file(process.out.assembly[0][1]).name,
process.out.versions,
bam(process.out.assembly[0][1]).getSamLinesMD5(),
process.out.versions
).match()
}
)
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4 changes: 2 additions & 2 deletions modules/nf-core/gridss/gridss/tests/main.nf.test.snap
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Expand Up @@ -86,7 +86,7 @@
},
"human - bam - assembly": {
"content": [
"test.vcf.gz.assembly.bam",
"d41d8cd98f00b204e9800998ecf8427e",
[
"versions.yml:md5,139867df5d7eaf22a89ae574f08e8d80"
]
Expand All @@ -95,6 +95,6 @@
"nf-test": "0.8.4",
"nextflow": "24.04.2"
},
"timestamp": "2024-07-08T16:25:43.596313"
"timestamp": "2024-07-09T10:29:33.266756"
}
}
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