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Pull requests: nf-core/modules

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Pull requests list

Add a module for MashMap
#6208 opened Aug 16, 2024 by mberacochea Loading…
13 of 14 tasks
chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.6.1
#6207 opened Aug 16, 2024 by renovate bot Loading…
2 tasks
6201 feature add stub in picardcreatesequencedictionary
#6205 opened Aug 16, 2024 by kubranarci Loading…
17 tasks
1
1
Pilon: allow adjustment of allocated memory
#6195 opened Aug 15, 2024 by tstoeriko Loading…
1 task done
1
5
fixes sample fastq output bug in cellranger mkfastq
#6190 opened Aug 15, 2024 by julicudini Loading…
17 tasks
1
3
Input annotations together with VCF in bcftools annotate
#6188 opened Aug 15, 2024 by fellen31 Loading…
17 tasks
Split deepvariant 3
#6172 opened Aug 13, 2024 by fa2k • Draft
8 of 15 tasks
1
18
Add Seurat/MULTI-seq
#6168 opened Aug 13, 2024 by mari-ga Loading…
10 of 17 tasks
1
added trio options
#6164 opened Aug 12, 2024 by yumisims Loading…
17 tasks
11
Add scAR module
#6157 opened Aug 10, 2024 by nictru • Draft
17 tasks
Fastqc: FIX memory over-allocation Ready for Review
#6156 opened Aug 9, 2024 by sguizard Loading…
2
mcstaging/phenoimager2mc
#6143 opened Aug 8, 2024 by chiarasch Loading…
9 of 11 tasks
6
Add nf-test to metaphlan
#6139 opened Aug 8, 2024 by LilyAnderssonLee Loading…
17 tasks
7
Transdecoder longorf and predict container images and versions update
#6123 opened Aug 6, 2024 by judz03 Loading…
3 of 17 tasks
1
ADD tabix index for indexcov
#6121 opened Aug 6, 2024 by lindenb Loading…
8 of 16 tasks
1
chore(config): migrate renovate config
#6117 opened Aug 6, 2024 by renovate bot Loading…
1 task
1
Changed prefix/prefix to dbs/prefix
#6116 opened Aug 6, 2024 by nbtm-sh Loading…
Add modules for single cell ambient RNA removal
#6108 opened Aug 5, 2024 by nictru • Draft
17 tasks done
port bam_baserecalibrator from sarek
#6097 opened Aug 2, 2024 by famosab Loading…
3 of 17 tasks
1
Update ichorcna to v0.5.1 and nf-test
#6079 opened Aug 1, 2024 by SPPearce Loading…
Allow to use task.ext.prefix for naming chromap index file and bump version 0.2.6
#6072 opened Jul 31, 2024 by JoseEspinosa Loading…
4 tasks done
chore(deps): update pre-commit hook renovatebot/pre-commit-hooks to v38.39.0
#6052 opened Jul 29, 2024 by renovate bot Loading…
2 tasks
update JSON schema for subworkflows meta.yml
#6031 opened Jul 24, 2024 by mirpedrol Loading…
Bulk update meta yml modules
#6015 opened Jul 22, 2024 by mirpedrol • Draft
Add dshbio/fastatoparquet module
#5994 opened Jul 18, 2024 by heuermh • Draft
17 tasks
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