{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":150795653,"defaultBranch":"master","name":"amr","ownerLogin":"ncbi","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-09-28T21:20:22.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3812119?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1709570423.0","currentOid":""},"activityList":{"items":[{"before":"9022e2d0866519343ad223d25133c80dbd97ccc9","after":"f1ae2d7ba2bddc40f0fd9f1bbe3afb373b6bcabb","ref":"refs/heads/stxtype","pushedAt":"2024-08-17T15:55:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5085 columns.hpp","shortMessageHtmlLink":"PD-5085 columns.hpp"}},{"before":"cff910dd729ab5403a74deabbcbbc5ea8abf694b","after":"9022e2d0866519343ad223d25133c80dbd97ccc9","ref":"refs/heads/stxtype","pushedAt":"2024-08-16T23:08:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5085 new AMRFinderPlus column names","shortMessageHtmlLink":"PD-5085 new AMRFinderPlus column names"}},{"before":"3fee8bb7285682d99d9512b89c5fe3f7be5b4eda","after":"cff910dd729ab5403a74deabbcbbc5ea8abf694b","ref":"refs/heads/stxtype","pushedAt":"2024-08-15T17:46:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Pin to latest changes for StxTyper","shortMessageHtmlLink":"Pin to latest changes for StxTyper"}},{"before":"ffde3f26cb8e43986f81a7908fe4d8a5f47a7797","after":"3fee8bb7285682d99d9512b89c5fe3f7be5b4eda","ref":"refs/heads/stxtype","pushedAt":"2024-08-15T13:29:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5084 mutation_std, mutation_reported; PD-5091 .fa, .tsv","shortMessageHtmlLink":"PD-5084 mutation_std, mutation_reported; PD-5091 .fa, .tsv"}},{"before":"9413aeb0a8de59b4eaea62810f1019113b8fc41e","after":"ffde3f26cb8e43986f81a7908fe4d8a5f47a7797","ref":"refs/heads/stxtype","pushedAt":"2024-08-06T20:02:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Pin to latest stxtyper commit","shortMessageHtmlLink":"Pin to latest stxtyper commit"}},{"before":"ca6142cffafc9a2f39a69809ef0b9ac47695948f","after":"9413aeb0a8de59b4eaea62810f1019113b8fc41e","ref":"refs/heads/stxtype","pushedAt":"2024-08-06T15:05:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"new stxtyper","shortMessageHtmlLink":"new stxtyper"}},{"before":"ca03a4550327c81a0d2a8e9be08db791cbf2d7a8","after":"ca6142cffafc9a2f39a69809ef0b9ac47695948f","ref":"refs/heads/stxtype","pushedAt":"2024-08-06T12:12:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Updates to stxtyper","shortMessageHtmlLink":"Updates to stxtyper"}},{"before":"305b7ee559211f1dec41e89e8f16308b21bc7151","after":"ca03a4550327c81a0d2a8e9be08db791cbf2d7a8","ref":"refs/heads/stxtype","pushedAt":"2024-08-05T20:49:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5076 StxTyper version 1.0.24","shortMessageHtmlLink":"PD-5076 StxTyper version 1.0.24"}},{"before":"952e71da63235af20a5f983de17746dc70036421","after":"305b7ee559211f1dec41e89e8f16308b21bc7151","ref":"refs/heads/stxtype","pushedAt":"2024-08-02T13:09:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Link stxtyper to latest dev version","shortMessageHtmlLink":"Link stxtyper to latest dev version"}},{"before":"6a684df53372ab24811706ef93a12fc60c38a9e1","after":"952e71da63235af20a5f983de17746dc70036421","ref":"refs/heads/stxtype","pushedAt":"2024-07-29T21:00:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5064 StxTyper version 1.0.23; URLs in messages are in blue color","shortMessageHtmlLink":"PD-5064 StxTyper version 1.0.23; URLs in messages are in blue color"}},{"before":"0fad7be36a835cfb32070e4bf470beada71e55fa","after":"6a684df53372ab24811706ef93a12fc60c38a9e1","ref":"refs/heads/stxtype","pushedAt":"2024-07-25T15:05:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5054 Check that the file AMR_DNA-.ndb exists; StxTyper version 1.0.21 is used; missing -db_gencode parameter is added to tblastn","shortMessageHtmlLink":"PD-5054 Check that the file AMR_DNA-<organism>.ndb exists; StxTyper v…"}},{"before":"e2edf8e3ab65dcbff1d798e3c1bd0611f2cd0c36","after":"0fad7be36a835cfb32070e4bf470beada71e55fa","ref":"refs/heads/stxtype","pushedAt":"2024-06-06T17:49:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Restoring make clean to github_binaries target","shortMessageHtmlLink":"Restoring make clean to github_binaries target"}},{"before":"d85af400388897a7c9f4d0ef79393725c731bfe7","after":"e2edf8e3ab65dcbff1d798e3c1bd0611f2cd0c36","ref":"refs/heads/stxtype","pushedAt":"2024-06-05T16:05:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Updated github_binaries target to include stxtyper","shortMessageHtmlLink":"Updated github_binaries target to include stxtyper"}},{"before":"c3eabd15519ed3afc5117fe5ed88c21c6f17a866","after":"d85af400388897a7c9f4d0ef79393725c731bfe7","ref":"refs/heads/stxtype","pushedAt":"2024-06-04T13:38:24.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Change build for github_binaries to /usr/bin/g++\n\nPD-4946","shortMessageHtmlLink":"Change build for github_binaries to /usr/bin/g++"}},{"before":"011e976fd682975b368af1719615b98b288e04ef","after":"c3eabd15519ed3afc5117fe5ed88c21c6f17a866","ref":"refs/heads/stxtype","pushedAt":"2024-06-03T20:08:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5015 HMMs are not applied to mutation proteins; -db_gencode parameter is added to tblastn; PD-4969 redundant QC check is removed","shortMessageHtmlLink":"PD-5015 HMMs are not applied to mutation proteins; -db_gencode parame…"}},{"before":"a10f79182e3bd245a035e4b711a9de622fd0b316","after":"011e976fd682975b368af1719615b98b288e04ef","ref":"refs/heads/stxtype","pushedAt":"2024-06-03T15:18:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Update stxtyper","shortMessageHtmlLink":"Update stxtyper"}},{"before":"73963acd35eb60658da85c203a5cf2fd332ae9fe","after":"a10f79182e3bd245a035e4b711a9de622fd0b316","ref":"refs/heads/stxtype","pushedAt":"2024-06-03T15:14:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5014 duplicate susceptible proteins are not reported","shortMessageHtmlLink":"PD-5014 duplicate susceptible proteins are not reported"}},{"before":"9fe09c9ebc7ea76ad22be93a5d211a7467d51603","after":"73963acd35eb60658da85c203a5cf2fd332ae9fe","ref":"refs/heads/stxtype","pushedAt":"2024-05-22T21:14:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5004 a regular reference protein can have point mutations","shortMessageHtmlLink":"PD-5004 a regular reference protein can have point mutations"}},{"before":"777209194bf7c17e3a9292c2dd3d420bd112ccb5","after":"9fe09c9ebc7ea76ad22be93a5d211a7467d51603","ref":"refs/heads/stxtype","pushedAt":"2024-05-22T13:57:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Updates for version 1.0.20 of stxtyper","shortMessageHtmlLink":"Updates for version 1.0.20 of stxtyper"}},{"before":"674a775aa5f1b90564fde83d041984c53c7a8940","after":"777209194bf7c17e3a9292c2dd3d420bd112ccb5","ref":"refs/heads/stxtype","pushedAt":"2024-05-21T19:27:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-5002 StxTyper ver. 1.0.20","shortMessageHtmlLink":"PD-5002 StxTyper ver. 1.0.20"}},{"before":"22d75a844518c005d6e12ac14b5e307dc1312a43","after":"674a775aa5f1b90564fde83d041984c53c7a8940","ref":"refs/heads/stxtype","pushedAt":"2024-05-20T17:30:35.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Merge pull request #143 from ncbi/master\n\nUpdate for Makefile changes from release version","shortMessageHtmlLink":"Merge pull request #143 from ncbi/master"}},{"before":"4569dbf5baddb07525ce1574b907d76623d37d09","after":"22d75a844518c005d6e12ac14b5e307dc1312a43","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T16:59:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Updated install instructions in README","shortMessageHtmlLink":"Updated install instructions in README"}},{"before":"1039226f6d04b966dd4a3e97643d294c77325ff4","after":"4569dbf5baddb07525ce1574b907d76623d37d09","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T16:50:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Fix and clean up actions","shortMessageHtmlLink":"Fix and clean up actions"}},{"before":"d2d98466c332608a34be54ffb5c3354bcc6a5525","after":"ddfedc045259ba0b11f0e6e12a4d3bfdb29bed9b","ref":"refs/heads/dev","pushedAt":"2024-05-08T14:56:34.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"Merge pull request #142 from ncbi/master\n\nUpdates to Makefile for increased compatibility","shortMessageHtmlLink":"Merge pull request #142 from ncbi/master"}},{"before":"1568c320285b4c23f5a1dde82ffc0720bc23888e","after":"1039226f6d04b966dd4a3e97643d294c77325ff4","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T14:53:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Attempted workflow test fix","shortMessageHtmlLink":"Attempted workflow test fix"}},{"before":"6dfb779d14705c60dc69fa39188f5554f5522d55","after":"1568c320285b4c23f5a1dde82ffc0720bc23888e","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T14:48:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Debugging commands for GitHub action","shortMessageHtmlLink":"Debugging commands for GitHub action"}},{"before":"2f6a2c4bd6a00e44a905aa6fddc38314465aaf02","after":"6dfb779d14705c60dc69fa39188f5554f5522d55","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T14:42:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Updated README.md with compilation instructions","shortMessageHtmlLink":"Updated README.md with compilation instructions"}},{"before":"591010c0dd2028e86e2991432f25a52608deeb73","after":"2f6a2c4bd6a00e44a905aa6fddc38314465aaf02","ref":"refs/heads/stxtype","pushedAt":"2024-05-08T14:36:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"evolarjun","name":"Arjun Prasad","path":"/evolarjun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/27437102?s=80&v=4"},"commit":{"message":"Update hash for stxtyper","shortMessageHtmlLink":"Update hash for stxtyper"}},{"before":"229cfdc7c62e3d2514f48beaaedf55e012f86771","after":"591010c0dd2028e86e2991432f25a52608deeb73","ref":"refs/heads/stxtype","pushedAt":"2024-05-06T20:36:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"PD-4981 susceptible/point mutation collision","shortMessageHtmlLink":"PD-4981 susceptible/point mutation collision"}},{"before":"43ff0da28e38cc496edc9b8eba711f9a2e34c261","after":"229cfdc7c62e3d2514f48beaaedf55e012f86771","ref":"refs/heads/stxtype","pushedAt":"2024-04-09T20:24:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vbrover","name":"Vyacheslav Brover","path":"/vbrover","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/16804852?s=80&v=4"},"commit":{"message":"Merge branch 'stxtype' of https://github.com/ncbi/amr into stxtype","shortMessageHtmlLink":"Merge branch 'stxtype' of https://github.com/ncbi/amr into stxtype"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEnOQDggA","startCursor":null,"endCursor":null}},"title":"Activity · ncbi/amr"}