Building the constrained coding regions (CCR) model

Let Your server connect to colab

Zero-setup R with GitHub Codespaces

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

No content repository, used to launch RStudio Server in a docker for bioinformatics analyses

This is a demo repository to practice using GitHub.

JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes

Software program for checking sample matching for NGS data

Nextflow pipeline to detect matched BAMs with NGSCheckMate

Base docker image for CellGen JupyterHub

Podman Desktop - A graphical tool for developing on containers and Kubernetes

Examples of single-cell genomic analysis accelerated with RAPIDS

A README template for anyone to copy and use.

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

Analysis of single cell RNA-seq data course

Somatic variant calling pipeline using Mutect2 adapted from GATK Best Practices

Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms