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Issues: nanoporetech/pipeline-structural-variation

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19 Open 3 Closed
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Issues list

Check config values on invocation enhancement New feature or request
#3 opened Sep 10, 2019 by philres updated Sep 10, 2019
@philres
pipeline cannot access .py scripts at /home/user/pipeline-structural-variation-1.2.0/lib/pipeline_structural_variation
#5 opened Oct 16, 2019 by BCArg updated Nov 9, 2019
3
Question about the SV pipeline
#4 opened Sep 25, 2019 by mldmort updated Nov 14, 2019
1
snakemake install failure
#6 opened Nov 19, 2019 by chansnotes updated Apr 21, 2020
2
pipeline installation fails
#1 opened Aug 27, 2019 by kamalfartiyal84 updated Apr 21, 2020
7
mosdepth not found due to dependency issue
#7 opened Jan 23, 2020 by ashrosewood updated May 4, 2020
1
trouble installing pipeline
#10 opened Apr 27, 2020 by l-yampolsky updated May 12, 2020
7
_sniffles_filtered.vcf.gz no vcf headers
#13 opened Jun 19, 2020 by ggrimes updated Jun 19, 2020
Deprecated option in Snakefile call_sniffles
#14 opened Aug 16, 2020 by sotakan updated Aug 16, 2020
Start pipeline from VCF file
#15 opened Nov 1, 2020 by ndierckx updated Nov 1, 2020
VCF output not reporting translocations/inversions/duplications
#16 opened Jan 25, 2021 by damioresegun updated Jan 27, 2021
2
No module named 'boto3'
#17 opened Mar 20, 2021 by Payam-Ebadi updated Mar 20, 2021
1
Module dependency error
#20 opened Mar 26, 2021 by jimmy200340 updated Mar 26, 2021
cuteSV nanopore parameters.
#21 opened Mar 30, 2021 by humbleflowers updated Apr 8, 2021
1
Is cuteSV able to read .csi index file?
#22 opened Apr 14, 2021 by giuliafrascarelli updated Apr 14, 2021
Issue with eval target
#23 opened May 17, 2021 by ArjenB85 updated May 17, 2021
1
Solving environment fails
#24 opened Jul 7, 2021 by prakashraaz updated Jul 7, 2021
using pipeline-structural-variation for non-human data
#25 opened Jul 13, 2021 by splaisan updated Jul 13, 2021
MissingRuleException error
#19 opened Mar 24, 2021 by hannahgoldswain updated Jul 28, 2021
5
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