forked from nextflow-io/nextflow
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Makefile
143 lines (117 loc) · 2.68 KB
/
Makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
#
# Copyright 2013-2023, Seqera Labs
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# add parameters to the command line as `param=value` for example:
# make deps config=runtime
#
config ?= compileClasspath
ifdef module
mm = :${module}:
else
mm =
endif
clean:
rm -rf .nextflow*
rm -rf work
rm -rf modules/nextflow/.nextflow*
rm -rf modules/nextflow/work
rm -rf build
rm -rf modules/*/build
rm -rf plugins/*/build
./gradlew clean
compile:
./gradlew compile exportClasspath
@echo "DONE `date`"
assemble:
./gradlew compile assemble
check:
./gradlew check
#
# install compiled artifacts in Maven local dir
#
install:
BUILD_PACK=1 ./gradlew installLauncher publishToMavenLocal -Dmaven.repo.local=${HOME}/.nextflow/capsule/deps/
#
# Show dependencies try `make deps config=runtime`, `make deps config=google`
#
deps:
./gradlew -q ${mm}dependencies --configuration ${config}
deps-all:
./gradlew -q dependencyInsight --configuration ${config} --dependency ${module}
#
# Refresh SNAPSHOTs dependencies
#
refresh:
./gradlew --refresh-dependencies
#
# Run all tests or selected ones
#
test:
ifndef class
./gradlew ${mm}test
else
./gradlew ${mm}test --tests ${class}
endif
#
# Run smoke tests
#
smoke:
NXF_SMOKE=1 ./gradlew ${mm}test
#
# Upload JAR artifacts to Maven Central
#
upload:
./gradlew upload
#
# Create self-contained distribution package
#
pack:
BUILD_PACK=1 ./gradlew packAll
packCore:
BUILD_PACK=1 ./gradlew packCore
#
# Create self-contained distribution package, including GA4GH support and associated dependencies
#
packGA4GH:
BUILD_PACK=1 ./gradlew -PGA4GH packAll
#
# Upload NF launcher to nextflow.io web site
#
deploy:
BUILD_PACK=1 ./gradlew deploy
#
# Close artifacts uploaded to Maven central
#
close:
./gradlew closeAndReleaseRepository
#
# Upload final package to GitHub
#
release:
BUILD_PACK=1 ./gradlew release
#
# Create and upload docker image distribution
#
dockerImage:
BUILD_PACK=1 ./gradlew dockerImage
#
# Create local docker image
#
dockerPack:
BUILD_PACK=1 ./gradlew publishToMavenLocal dockerPack -Dmaven.repo.local=${PWD}/build/docker/.nextflow/capsule/deps/
upload-plugins:
./gradlew plugins:upload
publish-index:
./gradlew plugins:publishIndex