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DeepLIIF_Statistics

Statistics

  • Segmentation and classification accuracy metrics
    • Precision
    • Recall
    • F1-Score
    • Dice
    • IOU
    • Pixel Accuracy
    • Aggregated Jaccard Index (AJI)
  • Realistic image synthesis metrics
    • MSE
    • SSIM
    • Inception Score
    • FID Score
    • SWD

Installation

Please use the conda environment file.

conda env create -f environment.yml
conda activate statistics_env

Usage

To compute the segmentation/classification scores between two datasets, where images of each dataset are contained in an individual folder:

python ComputeStatisctics.py --gt_path path/to/ground-truth-masks 
                             --model_path path/to/masks-generated-by-model
                             --output_path path/to/output

Arguments:

  • Required
    • gt_path: path to ground-truth masks
    • model_path: path to masks generated by the model
    • output_path: path to save output csv files
    • mode: mode of the statistics computation including Segmentation (for computing segmentation accuracy metrics), ImageSynthesis (for computing realistic image synthesis metrics), All (for computing segmentation and image synthesis metrics)
    • raw_segmentation: use this argument if the segmentation mask needs refinement
    • image_types: types of images