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environment.yml
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environment.yml
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name: pytorch_env
channels:
- pytorch
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_llvm
- anyio=2.2.0=py38h578d9bd_0
- argon2-cffi=20.1.0=py38h497a2fe_2
- async_generator=1.10=py_0
- attrs=21.2.0=pyhd8ed1ab_0
- babel=2.9.1=pyh44b312d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- blas=1.0=mkl
- bleach=3.3.0=pyh44b312d_0
- boto3=1.17.64=pyhd8ed1ab_0
- botocore=1.20.64=pyhd8ed1ab_0
- brotlipy=0.7.0=py38h497a2fe_1001
- ca-certificates=2020.12.5=ha878542_0
- certifi=2020.12.5=py38h578d9bd_1
- cffi=1.14.5=py38ha65f79e_0
- chardet=4.0.0=py38h578d9bd_1
- cryptography=3.4.7=py38ha5dfef3_0
- cudatoolkit=10.1.243=h036e899_8
- decorator=5.0.7=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecation=2.1.0=pyh9f0ad1d_0
- entrypoints=0.3=pyhd8ed1ab_1003
- freetype=2.10.4=h0708190_1
- future=0.18.2=py38h578d9bd_3
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=4.0.1=py38h578d9bd_0
- ipykernel=5.5.4=py38hd0cf306_0
- ipython=7.23.1=py38hd0cf306_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.0=py38h578d9bd_2
- jinja2=2.11.3=pyh44b312d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter-packaging=0.10.1=pyhd8ed1ab_0
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_core=4.7.1=py38h578d9bd_0
- jupyter_server=1.6.4=py38h578d9bd_0
- jupyterlab=3.0.14=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.5.0=pyhd8ed1ab_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_18
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=9.3.0=h6de172a_18
- libtiff=4.2.0=hdc55705_0
- libwebp-base=1.2.0=h7f98852_2
- llvm-openmp=11.1.0=h4bd325d_0
- lz4-c=1.9.3=h9c3ff4c_0
- markupsafe=1.1.1=py38h497a2fe_3
- matplotlib-inline=0.1.2=pyhd8ed1ab_2
- mistune=0.8.4=py38h497a2fe_1003
- mkl=2020.4=h726a3e6_304
- mkl-service=2.3.0=py38h1e0a361_2
- mkl_fft=1.3.0=py38h5c078b8_1
- mkl_random=1.2.0=py38hc5bc63f_1
- nbclassic=0.2.7=pyhd8ed1ab_0
- nbclient=0.5.3=pyhd8ed1ab_0
- nbconvert=6.0.7=py38h578d9bd_3
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- ninja=1.10.2=h4bd325d_0
- notebook=6.3.0=pyha770c72_1
- numpy=1.19.2=py38h54aff64_0
- numpy-base=1.19.2=py38hfa32c7d_0
- olefile=0.46=pyh9f0ad1d_1
- openjdk=10.0.2=h14c3975_1015
- openssl=1.1.1k=h7f98852_0
- packaging=20.9=pyh44b312d_0
- pandoc=2.12=h7f98852_0
- pandocfilters=1.4.2=py_1
- parso=0.8.2=pyhd8ed1ab_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.1.2=py38ha0e1e83_0
- pip=21.0.1=pyhd8ed1ab_0
- prometheus_client=0.10.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.18=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.9.0=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py38h497a2fe_2
- pysocks=1.7.1=py38h578d9bd_3
- python=3.8.8=hffdb5ce_0_cpython
- python-bioformats=4.0.4=pyh3252c3a_0
- python-dateutil=2.8.1=py_0
- python-javabridge=4.0.0=py38h1e0a361_3
- python_abi=3.8=1_cp38
- pytorch=1.5.1=py3.8_cuda10.1.243_cudnn7.6.3_0
- pytz=2021.1=pyhd8ed1ab_0
- pyzmq=22.0.3=py38h2035c66_1
- readline=8.0=he28a2e2_2
- requests=2.25.1=pyhd3deb0d_0
- s3transfer=0.4.2=pyhd8ed1ab_0
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py38h578d9bd_3
- six=1.15.0=pyh9f0ad1d_0
- sniffio=1.2.0=py38h578d9bd_1
- sqlite=3.35.3=h74cdb3f_0
- terminado=0.9.4=py38h578d9bd_0
- testpath=0.4.4=py_0
- tk=8.6.10=h21135ba_1
- tomlkit=0.7.0=py38h578d9bd_3
- torchvision=0.6.1=py38_cu101
- tornado=6.1=py38h497a2fe_1
- traitlets=5.0.5=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- xz=5.2.5=h516909a_1
- zeromq=4.3.4=h9c3ff4c_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- dominate==2.6.0
- javabridge==1.0.19
- jsonpatch==1.32
- jsonpointer==2.1
- scipy==1.6.2
- torchfile==0.1.0
- visdom==0.1.8.9
- websocket-client==0.58.0
- opencv-python
- numba==0.57.1
- scikit-learn==0.24.2
- scikit-image==0.18.3