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@MG-RAST @BD2KGenomics @common-workflow-language @elixir-europe @OCfRW @reanahub @bio-tools-community @EOSC-LOFAR @common-workflow-lab @common-workflow-library

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  • simde Public

    Forked from simd-everywhere/simde

    Implementations of SIMD instruction sets for systems which don't natively support them.

    C MIT License Updated Nov 22, 2024

  • rust-rocksdb Public

    Forked from rust-rocksdb/rust-rocksdb

    rust wrapper for rocksdb

    Rust Apache License 2.0 Updated Nov 22, 2024

  • dipy Public

    Forked from dipy/dipy

    DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical imag…

    Python Other Updated Nov 20, 2024

  • hisat2 Public

    Forked from DaehwanKimLab/hisat2

    Graph-based alignment (Hierarchical Graph FM index)

    C++ 1 1 GNU General Public License v3.0 Updated Nov 16, 2024

  • mayavi Public

    Forked from enthought/mayavi

    3D visualization of scientific data in Python

    Python Other Updated Nov 15, 2024

  • sourmash Public

    Forked from sourmash-bio/sourmash

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python Other Updated Nov 13, 2024

  • rdflib Public

    Forked from RDFLib/rdflib

    RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 7, 2024

  • html5rdf Public

    Forked from RDFLib/html5rdf

    A fork of html5lib-modern, packaged for use in RDFLib

    Python MIT License Updated Nov 7, 2024

  • MMseqs2 Public

    Forked from soedinglab/MMseqs2

    MMseqs2: ultra fast and sensitive search and clustering suite

    C++ GNU General Public License v3.0 Updated Oct 25, 2024

  • psutil-feedstock Public

    Forked from regro-cf-autotick-bot/psutil-feedstock

    A conda-smithy repository for psutil.

    Shell BSD 3-Clause "New" or "Revised" License Updated Oct 25, 2024

  • scikit-bio Public

    Forked from scikit-bio/scikit-bio

    scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

    Python BSD 3-Clause "New" or "Revised" License Updated Oct 24, 2024

  • types-psutil-feedstock Public

    Forked from conda-forge/types-psutil-feedstock

    A conda-smithy repository for types-psutil.

    BSD 3-Clause "New" or "Revised" License Updated Oct 22, 2024

  • vec-collections Public

    Forked from rklaehn/vec-collections

    A set of collection data types for rust that are simple wrappers around vectors

    Rust Updated Oct 21, 2024

  • roots Public

    Forked from vorot/roots

    Library of well known algorithms for numerical root finding.

    Rust BSD 2-Clause "Simplified" License Updated Oct 18, 2024

  • workflow-run-crate-paper Public

    Forked from ResearchObject/workflow-run-crate-paper
    TeX Updated Oct 10, 2024

  • needletail Public

    Forked from onecodex/needletail

    Fast FASTX parsing and k-mer methods in Rust

    Rust MIT License Updated Oct 9, 2024

  • hmmlearn Public

    Forked from hmmlearn/hmmlearn

    Hidden Markov Models in Python, with scikit-learn like API

    Python BSD 3-Clause "New" or "Revised" License Updated Oct 7, 2024

  • DropletUtils Public

    Forked from MarioniLab/DropletUtils

    Clone of the Bioconductor repository for the DropletUtils package.

    R Updated Oct 5, 2024

  • mypy-dev Public

    Forked from cdce8p/mypy-dev
    Python Updated Oct 4, 2024

  • piz-rs Public

    Forked from mrkline/piz-rs

    Parallelized zip archive reading

    Rust zlib License Updated Sep 28, 2024

  • vsearch Public

    Forked from torognes/vsearch

    Versatile open-source tool for microbiome analysis

    C++ Other Updated Sep 25, 2024

  • galaxy Public

    Forked from galaxyproject/galaxy

    Data intensive biology for everyone.

    Python Other Updated Sep 23, 2024

  • rhdf5 Public

    Forked from grimbough/rhdf5

    Package providing an interface between HDF5 and R

    R Updated Sep 17, 2024

  • bx-python Public

    Forked from bxlab/bx-python

    Tools for manipulating biological data, particularly multiple sequence alignments

    Python MIT License Updated Sep 15, 2024

  • invesalius3 Public

    Forked from invesalius/invesalius3

    3D medical imaging reconstruction software

    Python GNU General Public License v2.0 Updated Sep 10, 2024

  • macsyfinder Public

    Forked from gem-pasteur/macsyfinder

    MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

    Python GNU General Public License v3.0 Updated Sep 7, 2024

  • smart_open Public

    Forked from piskvorky/smart_open

    Utils for streaming large files (S3, HDFS, gzip, bz2...)

    Python 1 MIT License Updated Aug 15, 2024

  • signposting-chrome-extension Public

    Forked from SandyRogers/signposting-chrome-extension

    Chrome browser extensions to report the existence of signposting.org links in HTTP/HTML headers

    JavaScript Apache License 2.0 Updated Aug 14, 2024

  • mypy Public

    Forked from python/mypy

    Optional static typing for Python

    Python Other Updated Aug 14, 2024

  • scran Public

    Forked from MarioniLab/scran

    Clone of the Bioconductor repository for the scran package.

    R Updated Jul 22, 2024