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setup.cfg
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setup.cfg
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[metadata]
name = bohra
author = Kristy Horan
author_email = [email protected]
description = A bioinformatics pipeline for analysing short read Illumina data microbiological public health.
version = 1.2.14
url = https://github.com/kristyhoran/bohra
classifiers =
Programming Language :: Python :: 3.7
Operating System :: OS Independent
Development Status :: 4 - Beta
Intended Audience :: Science/Research
Topic :: Scientific/Engineering :: Bio-Informatics
License :: OSI Approved :: GNU General Public License v3 (GPLv3)
long_description = file: README.md
long_description_content_type = text/markdown
license_files =
LICENSE.txt
[options]
python_requires = >= 3.7
packages = find:
zip_safe: False
install_requires =
pytest
jinja2
biopython>=1.70
pandas>=0.25.0
numpy
psutil
sh
packaging
snakemake>=5.9.1
configargparse
include_package_data = True
[options.extras_require]
tests =
pytest
flake8
[options.entry_points]
console_scripts =
bohra=bohra.bohra:main
[flake8]
ignore = E203, E266, E501, W503
max-line-length = 100
max-complexity = 18
select = B,C,E,F,W,T4,B9