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PICASO Public
Profiling Integrative Communities of Aggregated Single-cell Omics data
scrna-seq networks gene-regulatory-network differential-network-analysis functional-gene-regulatory-networkJupyter Notebook UpdatedAug 26, 2024 -
cPred Public
Predict the celltype of a cluster from Seurat FindMarker data
Python MIT License UpdatedMay 12, 2024 -
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miRExplore Public
miRExplore toolset stuff
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pIMZ Public
This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/
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poreSTAT Public
poreSTAT: a python framework for working with fast5 third generation sequencing data
JavaScript GNU General Public License v3.0 UpdatedJan 23, 2024 -
FlowSets Public
Analyse high-dimensional data in a longitudinal fashion and find similarly regulated sets of genes
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gardening Public
Gardening App for Watering Plants using ESP8266
Python GNU General Public License v3.0 UpdatedJul 8, 2023 -
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bioGUI Public
bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.
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chemokine_interactionmap Public
Derive a chemokine-chemokine interaction map from (sc)RNA-seq sequencing data
Jupyter Notebook MIT License UpdatedSep 4, 2022 -
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sarscov2_mirna_tm Public
Collecting SARS-CoV-2 encoded miRNAs via text mining
Python UpdatedApr 15, 2022 -
mpld3 Public
Forked from mpld3/mpld3D3 Renderings of Matplotlib Graphics
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedFeb 18, 2022 -
game_cibog_2022 Public
Workshop material for GAME-CIBoG workshop
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mplexporter Public
Forked from mpld3/mplexporterA general scraper/exporter for matplotlib plots
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 20, 2021 -
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sequ-into Public
Forked from igemsoftware2018/igem_munich_2018Third generation sequencing techniques rapidly evolved as a common practice in molecular biology. Great advances have been made in terms of feasibility, cost, throughput, and read-length. However, …
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CERMINE Public
Forked from CeON/CERMINEContent ExtRactor and MINEr
Java GNU Affero General Public License v3.0 UpdatedApr 2, 2020 -
surfacenet_python Public
SurfaceNets implementation in python3 // Volumetric Data to STL
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mOTUs_v2 Public
Forked from motu-tool/mOTUsmotus - a tool for marker gene-based OTU (mOTU) profiling
Python GNU General Public License v3.0 UpdatedAug 9, 2019