Inference script can't import InnerEye

[peterhessey]

Is there an existing issue for this?

• I have searched the existing issues

Bug summary

When running the command python InnerEye/Scripts/submit_for_inference.py the command fails with the following error:

Traceback (most recent call last):
  File "InnerEye/Scripts/submit_for_inference.py", line 25, in <module>
    from InnerEye.Azure.azure_config import AzureConfig
ModuleNotFoundError: No module named 'InnerEye'

This is as the InnerEye folder is not added to the system path before the script is run.

Code for reproduction

See inference script and command above

Actual outcome

Error message below

Error messages

Traceback (most recent call last):
  File "InnerEye/Scripts/submit_for_inference.py", line 25, in <module>
    from InnerEye.Azure.azure_config import AzureConfig
ModuleNotFoundError: No module named 'InnerEye'

Expected outcome

Script runs inference successfully

System info

No response

AB#6770