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This repository has been archived by the owner on Mar 21, 2024. It is now read-only.
The method MLRunner.run_inference_for_lightning_models takes a list of checkpoint paths as an argument, but then makes sure that there is only one used (here):
if len(checkpoint_paths) != 1:
raise ValueError(f"This method expects exactly 1 checkpoint for inference, but got {len(checkpoint_paths)}")
We want to change this so that the checkpoints gleaned from a BYOL cross validation run can be used as an ensemble model.
This will use the methods defined in the InnerEyeInference abstract class. We expect that these methods are sufficient, but an extension or redesign may be required.
Use the simple linear regression model as the basis of an exemplar.
It would be great to use another, more realistic model. The UHB Covid-19 model is not a lightning model, how about the Single Cell model?
dumbledad
changed the title
Enable building an ensemble models from the cross validation checkpoints of a BYOL model
Enable building an ensemble model from the cross validation checkpoints of a BYOL model
Jul 6, 2021
The method
MLRunner.run_inference_for_lightning_models
takes a list of checkpoint paths as an argument, but then makes sure that there is only one used (here):We want to change this so that the checkpoints gleaned from a BYOL cross validation run can be used as an ensemble model.
InnerEyeInference
abstract class. We expect that these methods are sufficient, but an extension or redesign may be required.AB#4219
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