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environment.yml
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environment.yml
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name: InnerEye
channels:
- defaults
- pytorch
- conda-forge
dependencies:
- cudatoolkit=11.1
- pip=20.1.1
- python=3.7.3
- pytorch=1.8.0
- python-blosc==1.7.0
- torchvision=0.9.0
- pip:
- git+https://github.com/analysiscenter/radio.git@6d53e25#egg=radio
- azure-mgmt-resource==12.1.0
- azure-mgmt-datafactory==1.1.0
- azure-storage-blob==12.6.0
- azureml-mlflow==1.36.0
- azureml-sdk==1.36.0
- azureml-tensorboard==1.36.0
- conda-merge==0.1.5
- cryptography==3.3.2
- dataclasses-json==0.5.2
- docker==4.3.1
- flake8==3.8.3
- gitpython==3.1.7
- gputil==1.4.0
- h5py==2.10.0
- InnerEye-DICOM-RT==1.0.1
- joblib==0.16.0
- jupyter==1.0.0
- jupyter-client==6.1.5
- lightning-bolts==0.3.4
- matplotlib==3.3.0
- mlflow==1.17.0
- monai==0.6.0
- mypy==0.910
- mypy-extensions==0.4.3
- numba==0.51.2
- numpy==1.19.1
- numba==0.51.2
- opencv-python-headless==4.5.1.48
- pandas==1.1.0
- papermill==2.2.2
- param==1.9.3
- pillow==8.3.2
- psutil==5.7.2
- pydicom==2.0.0
- pyflakes==2.2.0
- PyJWT==1.7.1
- pytest==6.0.1
- pytest-cov==2.10.1
- pytest-forked==1.3.0
- pytest-xdist==1.34.0
- pytorch-lightning==1.3.8
- rich==5.1.1
- rpdb==0.1.6
- ruamel.yaml==0.16.12
- runstats==1.8.0
- scikit-image==0.17.2
- scikit-learn==0.23.2
- scipy==1.5.2
- seaborn==0.10.1
- simpleitk==1.2.4
- six==1.15.0
- stopit==1.1.2
- tabulate==0.8.7
- tensorboard==2.3.0
- tensorboardX==2.1
- torchprof==1.3.3
- torchmetrics==0.4.1
- umap-learn==0.5.2
- yacs==0.1.8