Skip to content

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

License

Notifications You must be signed in to change notification settings

mdpearson/pysam

 
 

Repository files navigation

Pysam

build status Documentation Status

Pysam is a python module for reading and manipulating files in the SAM/BAM format. The SAM/BAM format is a way to store efficiently large numbers of alignments (Li 2009), such as those routinely created by next-generation sequencing methods.

Pysam is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

The latest version is available through pypi. To install, simply type:

pip install pysam

Pysam documentation is available through https://readthedocs.org/ from here

Questions and comments are very welcome and should be sent to the pysam user group

About

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages

  • C 84.2%
  • Python 14.4%
  • Makefile 0.5%
  • C++ 0.5%
  • Roff 0.3%
  • Shell 0.1%