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README.md

ViennaRNA libRNA wrapper generator

How to generate the wrappers

  1. cd to this directory
  2. run julia --project generator.jl

How to upgrade Clang.jl

  1. cd to this directory
  2. run julia --project and then in the Julia REPL, run pkg> up

Notes on patches to headers

Some headers of ViennaRNA have to be patched to be able to be parsed by Clang.jl. These patches can be found are under the directory patches-for-headers/. The patches are applied to a temporary copy of the header files that is deleted after parsing by the generator.jl script that generates the ../lib/LibRNA.jl file. This only needs to be done once on a developer's machine when the header files change.