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Setting cut-off when using logFE bigWig files from bdgcmp #646

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manjumoorthy95 opened this issue May 29, 2024 · 0 comments
Open

Setting cut-off when using logFE bigWig files from bdgcmp #646

manjumoorthy95 opened this issue May 29, 2024 · 0 comments

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@manjumoorthy95
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I have been using bigWig file from bdgcmp containing logFE values (compared ChIP signals against Input). As part of next step, I would like to use bdgpeakcall, where I am getting stuck in deciding the threshold. As suggested in the manual, I have tried the cut-off analysis step in bdgcallpeak, but ended up with an error.

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