Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Resources for "Natural Language Processing" Coursera course.

Repository for suggesting new lineages that should be added to the current scheme

A knowledge graph and a set of tools for drug repurposing

LLM-based ontological extraction tools, including SPIRES

Precision Medicine Knowledge Graph (PrimeKG)

Reference mapping for single-cell genomics

Formalizing and benchmarking open problems in single-cell genomics

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Mondo Disease Ontology

A platform for profiling public figures in Brazilian politics

dbSNP

Ontology Access Kit: A python library and command line application for working with ontologies

RO is an ontology of relations for use with biological ontologies

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Extracting biomedical relationships from literature with Snorkel 🏊

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

TaxoNERD : recognizing taxonomic entities using deep models

new implementation of Open Neuroscience website

GeneWiki Scheduled Bots

Worldwide AI Ethics (WAIE) is a systematic literature review done by AIRES researchers at PUCRS.

Repository to reproduce the results and figures from treeArches

Code accompanying the paper titled, "Single-cell transcriptomics for the 99.9% of species without reference genomes" by Botvinnik et al, 2021

Data Science project looking into the Peer Review Taxonomy