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mm_idx_str-like interface #3

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1dayac opened this issue Jan 29, 2021 · 1 comment
Open

mm_idx_str-like interface #3

1dayac opened this issue Jan 29, 2021 · 1 comment
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enhancement New feature or request

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@1dayac
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1dayac commented Jan 29, 2021

Hello Heng,

Unimap seems like a very useful tool!
Is it possible to provide a mm_idx_str - like interface for index construction in unimap? (that takes "const char **seq" instead of path to the reference file)

Thank you!

@lh3 lh3 added the enhancement New feature or request label Jan 29, 2021
@lh3
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lh3 commented Jan 29, 2021

Unfortunately, the current internal structure of unimap can only build an index from an input file, not from strings. It is non-trivial to create a mm_idx_str like interface. I may consider to bring the feature back when unimap becomes more stable.

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