R package for convergence assessment

Analytical scripts and XML relating to the analysis of H3N2 diffusion in the United States between 2011-2020

Introduction to using Virus phylodynamics using BEAST2

Input files and scripts related to our study entitled "Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City — from Alpha to Omicron" (Dellicour et al. 2023, PLoS Path.)

Large-scale virus genome sequencing reveals the genetic structure and importation dynamics of a national COVID-19 epidemic.

Data and codes for "SARS-CoV-2 Under an Elimination Strategy in Hong Kong"

Color Schemes based around artwork and the Museum of Modern Art.

Nextflow implementation of grapevine

Reconstruction of transmission trees using genomic data

Temporal clustering of a phylogeny

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Posterior Analysis of Coalescent Trees

A collection of documented examples using TreeTime

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

Informal summaries of notable SARS-CoV-2 lineages

CDC contract 75D30121C10133

An awesome README template to jumpstart your projects!

Runs from Southern USA States of SARSCoV2 data

🤖一个基于 WeChaty 结合 OpenAi ChatGPT / Kimi / 讯飞等Ai服务实现的微信机器人 ，可以用来帮助你自动回复微信消息，或者管理微信群/好友，检测僵尸粉等...