Commits

Commits on Jul 1, 2022

Fix problems single-end vs paired-end in ruleorder
dcerdanv
committedJul 1, 2022

Commits on Jun 30, 2022

Add fastqc for trimming and alignment target rules
dcerdanv
committedJun 30, 2022
Quit multiQC for trimming and align target rules
dcerdanv
committedJun 30, 2022

Commits on Jun 17, 2022

Add resources to concat rule
dcerdanv
committedJun 17, 2022

Commits on Jun 16, 2022

Merge pull request cnio-bu#1 from cnio-bu/Update-mem_mb-keyword
dcerdanv
committedJun 16, 2022
Fix trimming target rule
dcerdanv
committedJun 16, 2022
Update mem_mb keyword
dcerdanv
committedJun 16, 2022

Commits on Apr 5, 2022

Fix trimming single end
dcerdanv
committedApr 5, 2022

Commits on Apr 1, 2022

Manual
dcerdanv
committedApr 1, 2022

Commits on Dec 1, 2021

Subset colData by design matrix colnames
mj-jimenez
committedDec 1, 2021
Update multiqc version to 1.11
mj-jimenez
committedDec 1, 2021

Commits on Nov 25, 2021

Downsampling rule

mj-jimenez
authored and
dcerdanv
committedNov 25, 2021

Commits on Sep 29, 2021

Add dynamic Multiqc
dcerdanv
committedSep 29, 2021

Commits on Sep 8, 2021

Add target rules and Fix indexes problem finally
dcerdanv
committedSep 8, 2021

Commits on Sep 6, 2021

Fix cluster shared indexes problem
dcerdanv
committedSep 6, 2021
Refactor & Fix trimming

dcerdanv
authored and
SGMartin
committedSep 6, 2021

Commits on Sep 2, 2021

Merge branch 'plots'
SGMartin
committedSep 2, 2021
Draw allSamples plots only if necessary
mj-jimenez
committedSep 2, 2021
Change PCA's legend title
mj-jimenez
committedSep 2, 2021
Make level colors consistent across all plots
mj-jimenez
committedSep 2, 2021

Commits on Sep 1, 2021

Update environments
mj-jimenez
committedSep 1, 2021
Remove commented lines
mj-jimenez
committedSep 1, 2021
Don't show unused levels in distance plots
mj-jimenez
committedSep 1, 2021
Remove the desigmatrix as distance rule parameter
mj-jimenez
committedSep 1, 2021
Remove duplicated library from deseq2_init.R
mj-jimenez
committedSep 1, 2021
Correct paths when chosen_aligner == "salmon"
mj-jimenez
committedSep 1, 2021
Save plots in a plot folder
mj-jimenez
committedSep 1, 2021

Commits on Aug 31, 2021

Correct comment in deseq2_init.R
mj-jimenez
committedAug 31, 2021
Add expression_heatmap rule
mj-jimenez
committedAug 31, 2021
Add resources to plots' rules
mj-jimenez
committedAug 31, 2021
Add plots as output when chosen_aligner == salmon
mj-jimenez
committedAug 31, 2021
Add distance rule
mj-jimenez
committedAug 31, 2021

Commits on Aug 30, 2021

Add MA plots rule
mj-jimenez
committedAug 30, 2021
Correct error in get_variables_interest()

mj-jimenez
authored and
dcerdanv
committedAug 30, 2021

Commits on Aug 27, 2021

Plot batch corrected PCAs
mj-jimenez
committedAug 27, 2021