cd-hit
------------------------------------------
CD-HIT is a very widely used program for clustering and comparing protein or
nucleotide sequences.

Runtime requirements:
  bash-4.1.10-4
  cygwin-1.7.22-1
  libgcc1-4.7.3-1
  libgomp1-4.7.3-1
  libstdc++6-4.7.3-1
  perl-5.14.2-3

Build requirements:
(besides corresponding -devel packages)
  binutils-2.23.51-1
  cygport-0.12.2-1
  gcc-core-4.7.3-1
  gcc-g++-4.7.3-1
  make-3.82.90-1

Canonical website:
  https://weizhong-lab.ucsd.edu/cd-hit/

Canonical download:
  https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz

-------------------------------------------

Build instructions:
  unpack cd-hit-4.6.1-X-src.tar.bz2
    if you use setup to install this src package, it will be
         unpacked under /usr/src automatically
  cd /usr/src
  cygport ./cd-hit-4.6.1-X.cygport all

This will create:
  /usr/src/cd-hit-4.6.1-X-src.tar.bz2
  /usr/src/cd-hit-4.6.1-X.tar.bz2

-------------------------------------------

Files included in the binary package:

(cd-hit)
  /usr/bin/cd-hit-2d-para.pl
  /usr/bin/cd-hit-2d.exe
  /usr/bin/cd-hit-454.exe
  /usr/bin/cd-hit-div.exe
  /usr/bin/cd-hit-div.pl
  /usr/bin/cd-hit-est-2d.exe
  /usr/bin/cd-hit-est.exe
  /usr/bin/cd-hit-para.pl
  /usr/bin/cd-hit.exe
  /usr/bin/clstr2tree.pl
  /usr/bin/clstr2txt.pl
  /usr/bin/clstr2xml.pl
  /usr/bin/clstr_cut.pl
  /usr/bin/clstr_merge.pl
  /usr/bin/clstr_merge_noorder.pl
  /usr/bin/clstr_quality_eval.pl
  /usr/bin/clstr_quality_eval_by_link.pl
  /usr/bin/clstr_reduce.pl
  /usr/bin/clstr_renumber.pl
  /usr/bin/clstr_rep.pl
  /usr/bin/clstr_reps_faa_rev.pl
  /usr/bin/clstr_rev.pl
  /usr/bin/clstr_select.pl
  /usr/bin/clstr_select_rep.pl
  /usr/bin/clstr_size_histogram.pl
  /usr/bin/clstr_size_stat.pl
  /usr/bin/clstr_sort_by.pl
  /usr/bin/clstr_sort_prot_by.pl
  /usr/bin/clstr_sql_tbl.pl
  /usr/bin/clstr_sql_tbl_sort.pl
  /usr/bin/make_multi_seq.pl
  /usr/bin/plot_2d.pl
  /usr/bin/plot_len1.pl
  /usr/bin/psi-cd-hit-2d-g1.pl
  /usr/bin/psi-cd-hit-2d.pl
  /usr/bin/psi-cd-hit-local.pl
  /usr/bin/psi-cd-hit.pl
  /usr/share/doc/Cygwin/cd-hit.README
  /usr/share/doc/cd-hit/ChangeLog
  /usr/share/doc/cd-hit/Figure1.png
  /usr/share/doc/cd-hit/Figure2.png
  /usr/share/doc/cd-hit/Figure3.png
  /usr/share/doc/cd-hit/Figure4.png
  /usr/share/doc/cd-hit/LICENSE.txt
  /usr/share/doc/cd-hit/README
  /usr/share/doc/cd-hit/cdhit-user-guide.pdf
  /usr/share/doc/cd-hit/cdhit-user-guide.tex
  /usr/share/doc/cd-hit/cdhit-user-guide.wiki
  /usr/share/doc/cd-hit/dokuwiki2latex.dao

------------------

Port Notes:

----- version 4.6.1-1bl1 -----
Version bump.

----- version 4.6-1bl1 -----
Initial release for Cygwin-1.7 by fd0 <https://d.hatena.ne.jp/fd0>