bfast
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BFAST facilitates the fast and accurate mapping of short reads to reference
sequences.

Runtime requirements:
  cygwin-1.7.14-2
  libbz2_1-1.0.6-2
  zlib0-1.2.5-1

Build requirements:
(besides corresponding -devel packages)
  autoconf-10-1
  automake-4-10
  binutils-2.22.51-2
  cygport-0.10.10-1
  gawk-4.0.1-1
  gcc4-core-4.5.3-3
  libtool-2.4-1
  make-3.82.90-1

Canonical website:
  https://sourceforge.net/apps/mediawiki/bfast/

Canonical download:
  mirror:https://sourceforge/bfast/bfast-0.7.0a.tar.gz

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Build instructions:
  unpack bfast-0.7.0a-X-src.tar.bz2
    if you use setup to install this src package, it will be
	 unpacked under /usr/src automatically
  cd /usr/src
  cygport ./bfast-0.7.0a-X.cygport all

This will create:
  /usr/src/bfast-0.7.0a-X-src.tar.bz2
  /usr/src/bfast-0.7.0a-X.tar.bz2

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Files included in the binary package:

(bfast)
  /usr/bin/balignmentscoredistribution.exe
  /usr/bin/balignsim.exe
  /usr/bin/bevalsim.exe
  /usr/bin/bfast.exe
  /usr/bin/bfast.resubmit.pl
  /usr/bin/bfast.submit.pl
  /usr/bin/bgeneratereads.exe
  /usr/bin/bindexdist.exe
  /usr/bin/bindexhist.exe
  /usr/bin/bmfmerge.exe
  /usr/bin/brepeat.exe
  /usr/bin/btestindexes.exe
  /usr/bin/ill2fastq.pl
  /usr/bin/solid2fastq.exe
  /usr/share/doc/Cygwin/bfast.README
  /usr/share/doc/bfast/AUTHORS
  /usr/share/doc/bfast/COPYING
  /usr/share/doc/bfast/ChangeLog
  /usr/share/doc/bfast/LICENSE
  /usr/share/doc/bfast/NEWS
  /usr/share/doc/bfast/README
  /usr/share/doc/bfast/bfast-book.pdf

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Port Notes:

----- version 0.7.0a-1bl1 -----
Version bump.

----- version 0.6.5a-1bl1 -----
Version bump.

----- version 0.6.4e-1bl1 -----
Version bump.

----- version 0.6.3c-1bl1 -----
Initial release for Cygwin-1.7 by fd0 <https://d.hatena.ne.jp/fd0>