bfast
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bfast ------------------------------------------ BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Runtime requirements: cygwin-1.7.14-2 libbz2_1-1.0.6-2 zlib0-1.2.5-1 Build requirements: (besides corresponding -devel packages) autoconf-10-1 automake-4-10 binutils-2.22.51-2 cygport-0.10.10-1 gawk-4.0.1-1 gcc4-core-4.5.3-3 libtool-2.4-1 make-3.82.90-1 Canonical website: https://sourceforge.net/apps/mediawiki/bfast/ Canonical download: mirror:https://sourceforge/bfast/bfast-0.7.0a.tar.gz ------------------------------------------- Build instructions: unpack bfast-0.7.0a-X-src.tar.bz2 if you use setup to install this src package, it will be unpacked under /usr/src automatically cd /usr/src cygport ./bfast-0.7.0a-X.cygport all This will create: /usr/src/bfast-0.7.0a-X-src.tar.bz2 /usr/src/bfast-0.7.0a-X.tar.bz2 ------------------------------------------- Files included in the binary package: (bfast) /usr/bin/balignmentscoredistribution.exe /usr/bin/balignsim.exe /usr/bin/bevalsim.exe /usr/bin/bfast.exe /usr/bin/bfast.resubmit.pl /usr/bin/bfast.submit.pl /usr/bin/bgeneratereads.exe /usr/bin/bindexdist.exe /usr/bin/bindexhist.exe /usr/bin/bmfmerge.exe /usr/bin/brepeat.exe /usr/bin/btestindexes.exe /usr/bin/ill2fastq.pl /usr/bin/solid2fastq.exe /usr/share/doc/Cygwin/bfast.README /usr/share/doc/bfast/AUTHORS /usr/share/doc/bfast/COPYING /usr/share/doc/bfast/ChangeLog /usr/share/doc/bfast/LICENSE /usr/share/doc/bfast/NEWS /usr/share/doc/bfast/README /usr/share/doc/bfast/bfast-book.pdf ------------------ Port Notes: ----- version 0.7.0a-1bl1 ----- Version bump. ----- version 0.6.5a-1bl1 ----- Version bump. ----- version 0.6.4e-1bl1 ----- Version bump. ----- version 0.6.3c-1bl1 ----- Initial release for Cygwin-1.7 by fd0 <https://d.hatena.ne.jp/fd0>