{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":428860719,"defaultBranch":"development","name":"hippynn","ownerLogin":"lanl","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-11-17T00:45:13.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/585305?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721252188.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"c729366f1193ffbab1eea661e681234f445653ec","ref":"refs/heads/torchMemory","pushedAt":"2024-07-17T21:36:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bnebgen-LANL","name":null,"path":"/bnebgen-LANL","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/77704429?s=80&v=4"},"commit":{"message":"Merge branch 'development' of github.com:lanl/hippynn into torchMemory","shortMessageHtmlLink":"Merge branch 'development' of github.com:lanl/hippynn into torchMemory"}},{"before":"25dfde9c2c5b67b0bd2ad2a56833d5d466e42f96","after":"49ee8761c79aef99ee2484c2c091b051eb255ab2","ref":"refs/heads/gh-pages","pushedAt":"2024-07-17T21:26:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"00e0094dc8e78fa755336695b2e84fd190e62df3","after":"9c221a0b825e2919fd3874dbd2a91bf6f87a14f1","ref":"refs/heads/development","pushedAt":"2024-07-17T21:24:55.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"bnebgen-LANL","name":null,"path":"/bnebgen-LANL","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/77704429?s=80&v=4"},"commit":{"message":"Enabled removing leading comments from json DB (#83)\n\nEncountered a json DB without leading comments.\r\n\r\nAdded option to adjust the number of expected comments in a json DB.","shortMessageHtmlLink":"Enabled removing leading comments from json DB (#83)"}},{"before":null,"after":"18bb3545af6a3e936b3006fd3bb329b823632d25","ref":"refs/heads/jsonComment","pushedAt":"2024-07-04T04:03:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bnebgen-LANL","name":null,"path":"/bnebgen-LANL","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/77704429?s=80&v=4"},"commit":{"message":"Enabled removing leading comments from json DB\n\nEncountered a json DB without leading comments.\n\nAdded option to adjust the number of expected comments in a json DB.","shortMessageHtmlLink":"Enabled removing leading comments from json DB"}},{"before":"ae089fd1ed79656aae012004abd59e70b27de3aa","after":"25dfde9c2c5b67b0bd2ad2a56833d5d466e42f96","ref":"refs/heads/gh-pages","pushedAt":"2024-06-24T19:26:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"7e6614e4be1ea1abe9f3ab7f88944239f40ac9e7","after":"00e0094dc8e78fa755336695b2e84fd190e62df3","ref":"refs/heads/development","pushedAt":"2024-06-24T19:25:17.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"minor changes to MD code & its documentation (#81)\n\n* Make VariableUpdater in molecular_dynamics/md.py public and fix documentation formatting in same file","shortMessageHtmlLink":"minor changes to MD code & its documentation (#81)"}},{"before":"05af2719b9a453e7fc7c0c989287e2659e659923","after":"ae089fd1ed79656aae012004abd59e70b27de3aa","ref":"refs/heads/gh-pages","pushedAt":"2024-06-24T19:14:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"e1c2ba99cd9beafc647770e6d7fb87ebcd37606b","after":"7e6614e4be1ea1abe9f3ab7f88944239f40ac9e7","ref":"refs/heads/development","pushedAt":"2024-06-24T19:12:40.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"fix imports issue causing error when building docs (#80)\n\nupdate progress bar in molecular_dynamics/md.py for consistency, fix spacing, fix bug in examples/molecular_dynamics.py","shortMessageHtmlLink":"fix imports issue causing error when building docs (#80)"}},{"before":"3fc7a3117ac5e0265ecc82343287932316bb4b02","after":"e1c2ba99cd9beafc647770e6d7fb87ebcd37606b","ref":"refs/heads/development","pushedAt":"2024-06-24T18:01:48.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"update docstring format in molecular_dynamics/md.py for compatibility with sphinx (#79)\n\n* update docstring format in molecular_dynamics/md.py for compatibility with sphinx","shortMessageHtmlLink":"update docstring format in molecular_dynamics/md.py for compatibility…"}},{"before":"e685c1426344201d86f03e637b1612fb00079ae2","after":"05af2719b9a453e7fc7c0c989287e2659e659923","ref":"refs/heads/gh-pages","pushedAt":"2024-06-10T20:19:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"3f0c60593c0452a3d95db14b39991c60546e1200","after":"3fc7a3117ac5e0265ecc82343287932316bb4b02","ref":"refs/heads/development","pushedAt":"2024-06-10T20:17:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"06102024 add optimizer/ with batch FIRE algorithm implemented with pytorch (#78)\n\nalso a hippynn wrapper under __init__.py\r\n\r\nCo-authored-by: Shuhao Zhang ","shortMessageHtmlLink":"06102024 add optimizer/ with batch FIRE algorithm implemented with py…"}},{"before":"41ad80be7f6350e91c2ab4aa6f1403d5e124d114","after":"3f0c60593c0452a3d95db14b39991c60546e1200","ref":"refs/heads/development","pushedAt":"2024-06-06T21:52:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"add documentation for new md code (#77)","shortMessageHtmlLink":"add documentation for new md code (#77)"}},{"before":"4c36ecab5acb1d5b7e7302b3ddfe1ca8d7929f0b","after":"e685c1426344201d86f03e637b1612fb00079ae2","ref":"refs/heads/gh-pages","pushedAt":"2024-06-06T21:22:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"076f42c90b256adc97865e709d0335cc062e0456","after":"41ad80be7f6350e91c2ab4aa6f1403d5e124d114","ref":"refs/heads/development","pushedAt":"2024-06-06T21:21:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"add documentation for new md code (#76)","shortMessageHtmlLink":"add documentation for new md code (#76)"}},{"before":"7e8246bb5d09e593b16fd1883e5fe927253b3514","after":"076f42c90b256adc97865e709d0335cc062e0456","ref":"refs/heads/development","pushedAt":"2024-06-05T19:51:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"update graph exploration example notebook","shortMessageHtmlLink":"update graph exploration example notebook"}},{"before":"2c629079ea78b6a2b1eee28918f0e75b970f0583","after":"4c36ecab5acb1d5b7e7302b3ddfe1ca8d7929f0b","ref":"refs/heads/gh-pages","pushedAt":"2024-06-05T18:48:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"0796fe47617762215533457502d6325ff7d24a22","after":"7e8246bb5d09e593b16fd1883e5fe927253b3514","ref":"refs/heads/development","pushedAt":"2024-06-05T18:47:20.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"Add custom MD driver and improve pairfinder memory performance (#71)\n\n* working md code, matches example ase_example.py\r\n\r\n* working md example and fully documented md driver code\r\n\r\n* almost ready to go\r\n\r\n* update pairfinders with memory to send trimmed lists\r\n\r\n* add comment\r\n\r\n* fix bug with no seed set\r\n\r\n* add PBC wrapping to MD algorithm\r\n\r\n* v2 of md driver\r\n\r\n* duplicate wrap systems function removed, some typing requirements removed\r\n\r\n* add pair filter function\r\n\r\n* typo\r\n\r\n* update documentation","shortMessageHtmlLink":"Add custom MD driver and improve pairfinder memory performance (#71)"}},{"before":"4bc2190123494411634c0f5c99434fc2b96cd194","after":"2c629079ea78b6a2b1eee28918f0e75b970f0583","ref":"refs/heads/gh-pages","pushedAt":"2024-06-04T21:51:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"8d5fd8a433b5978851135e5c60ebf88b0da89282","after":"0796fe47617762215533457502d6325ff7d24a22","ref":"refs/heads/development","pushedAt":"2024-06-04T21:49:39.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"shinkle-lanl","name":"Emily Shinkle","path":"/shinkle-lanl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28961953?s=80&v=4"},"commit":{"message":"fix coordinate wrapping issue in KDTree paifinders (#73)","shortMessageHtmlLink":"fix coordinate wrapping issue in KDTree paifinders (#73)"}},{"before":"06bcd0d78ee2358dadd775ca09fc0d016815825e","after":"4bc2190123494411634c0f5c99434fc2b96cd194","ref":"refs/heads/gh-pages","pushedAt":"2024-04-30T16:43:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"cefc093ff43f6d73000f0298c67b02cb770a8b52","after":"8d5fd8a433b5978851135e5c60ebf88b0da89282","ref":"refs/heads/development","pushedAt":"2024-04-30T16:41:37.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"bnebgen-LANL","name":null,"path":"/bnebgen-LANL","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/77704429?s=80&v=4"},"commit":{"message":"Added write_h5 function (#70)\n\nFacilitates dumping of database to h5 format. See documentation string\r\nfor more details.","shortMessageHtmlLink":"Added write_h5 function (#70)"}},{"before":null,"after":"bbc96fb010d8ffb52044c78a0b055200af574108","ref":"refs/heads/h5_write","pushedAt":"2024-04-26T20:47:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bnebgen-LANL","name":null,"path":"/bnebgen-LANL","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/77704429?s=80&v=4"},"commit":{"message":"Added write_h5 function\n\nFacilitates dumping of database to h5 format. See documentation string\nfor more details.","shortMessageHtmlLink":"Added write_h5 function"}},{"before":"036b153f7975719f5bfd8050a848207d5fe36262","after":"cefc093ff43f6d73000f0298c67b02cb770a8b52","ref":"refs/heads/development","pushedAt":"2024-04-25T23:03:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"update new notebook","shortMessageHtmlLink":"update new notebook"}},{"before":"2688ce80164689bc9988b4ff665506d948df6e32","after":"06bcd0d78ee2358dadd775ca09fc0d016815825e","ref":"refs/heads/gh-pages","pushedAt":"2024-04-24T22:59:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"2f0671f30c490a6a677304418ca7ffa96421fe3a","after":"036b153f7975719f5bfd8050a848207d5fe36262","ref":"refs/heads/development","pushedAt":"2024-04-24T22:57:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"Add notebook for graph visualization","shortMessageHtmlLink":"Add notebook for graph visualization"}},{"before":"5969a9dde10831f26a0a0bddd834c27bc9fd120d","after":"2688ce80164689bc9988b4ff665506d948df6e32","ref":"refs/heads/gh-pages","pushedAt":"2024-04-16T21:56:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"7d3e0f3af24e2d7b4d83dddb2292fa2dfe464df2","after":"2f0671f30c490a6a677304418ca7ffa96421fe3a","ref":"refs/heads/development","pushedAt":"2024-04-16T21:54:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"Fix for bug introduced for database loading\n\nWhen loading a database with allow_unfound=True and without\ndatabase inputs and targets, the code would fail due to the\ninability to process the database.var_list in this case.\n\nNow, in this case, the check is skipped, as in prior versions,\nbut now information about skipping the check is printed.","shortMessageHtmlLink":"Fix for bug introduced for database loading"}},{"before":"80e7a3fa8cc77156ce8b17b6736f48e8ca78642e","after":"5969a9dde10831f26a0a0bddd834c27bc9fd120d","ref":"refs/heads/gh-pages","pushedAt":"2024-04-13T07:18:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}},{"before":"604a93c0eef9b7b5ed0be6b7724d554a11e9ab08","after":"7d3e0f3af24e2d7b4d83dddb2292fa2dfe464df2","ref":"refs/heads/development","pushedAt":"2024-04-13T07:16:37.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"lubbersnick","name":"Nicholas Lubbers","path":"/lubbersnick","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56895592?s=80&v=4"},"commit":{"message":"Ensemble creation feature (#68)\n\n* first draft of ensemble code\r\n\r\n* add ensemble.py\r\n\r\n* working version, still working on merging identical nodes\r\n\r\n* add merging of identical nodes and some cleaning\r\n\r\n* try to add type annotations\r\n\r\n* adding ensemble usage example\r\n\r\n* update docs for ensembles and more\r\n\r\n* further docs\r\n\r\n* update example wording","shortMessageHtmlLink":"Ensemble creation feature (#68)"}},{"before":"bb182b6e5bd864c33b0503442befcb41cdb7f3ab","after":"80e7a3fa8cc77156ce8b17b6736f48e8ca78642e","ref":"refs/heads/gh-pages","pushedAt":"2024-04-10T22:22:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Update documentations","shortMessageHtmlLink":"Update documentations"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEgkkgDAA","startCursor":null,"endCursor":null}},"title":"Activity · lanl/hippynn"}