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sqlite3.OperationalError: table _alembic_tmp_flow already exists during Langflow startup #2139

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NeoVand opened this issue Jun 11, 2024 · 2 comments
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bug Something isn't working

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@NeoVand
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NeoVand commented Jun 11, 2024

Description:
When attempting to run Langflow (version v1.0.0a50), the application fails to start due to an error encountered during the database migration process. The specific error indicates that a temporary table (_alembic_tmp_flow) already exists in the SQLite database, causing a conflict and preventing the application from proceeding.

Steps to Reproduce:

Execute the command langflow run.
Observe the error during the startup process.
Expected Behavior:
Langflow should successfully run without encountering database migration errors.

Actual Behavior:
Langflow fails to start, logging the following error:

`~ % langflow run
Starting Langflow v1.0.0a50...
[06/11/24 11:59:19] ERROR 2024-06-11 11:59:19 - ERROR - main - main.py:59
(sqlite3.OperationalError) table
_alembic_tmp_flow already exists
[SQL:
CREATE TABLE _alembic_tmp_flow (
name VARCHAR NOT NULL,
description VARCHAR,
icon VARCHAR,
icon_bg_color VARCHAR,
is_component BOOLEAN,
updated_at DATETIME,
id CHAR(32) NOT NULL,
data JSON,
user_id CHAR(32),
folder_id CHAR(32),
endpoint_name VARCHAR,
PRIMARY KEY (id),
CONSTRAINT flow_folder_id_fkey
FOREIGN KEY(folder_id) REFERENCES folder
(id),
CONSTRAINT fk_flow_user_id_user
FOREIGN KEY(user_id) REFERENCES user
(id),
CONSTRAINT
unique_flow_endpoint_name UNIQUE
(user_id, endpoint_name),
CONSTRAINT unique_flow_name
UNIQUE (user_id, name),
UNIQUE (id)
)

                         ]                                                  
                         (Background on this error at:                      
                         https://sqlalche.me/e/20/e3q8)                     
                ERROR    2024-06-11 11:59:19 - ERROR    - on -     on.py:121
                         Traceback (most recent call last):                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/datab          
                         ase/service.py", line 171, in                      
                         run_migrations                                     
                             command.check(alembic_cfg)                     
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/command.py",             
                         line 290, in check                                 
                             script_directory.run_env()                     
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/script/base.py"          
                         , line 583, in run_env                             
                             util.load_python_file(self.dir,                
                         "env.py")                                          
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/util/pyfiles.py          
                         ", line 95, in load_python_file                    
                             module = load_module_py(module_id,             
                         path)                                              
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/util/pyfiles.py          
                         ", line 113, in load_module_py                     
                             spec.loader.exec_module(module)  #             
                         type: ignore                                       
                           File "<frozen                                    
                         importlib._bootstrap_external>", line              
                         883, in exec_module                                
                           File "<frozen importlib._bootstrap>",            
                         line 241, in _call_with_frames_removed             
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/alembic/env.py          
                         ", line 97, in <module>                            
                             run_migrations_online()                        
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/alembic/env.py          
                         ", line 91, in run_migrations_online               
                             context.run_migrations()                       
                           File "<string>", line 8, in                      
                         run_migrations                                     
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/runtime/environ          
                         ment.py", line 948, in run_migrations              
                             self.get_context().run_migrations(**k          
                         w)                                                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/runtime/migrati          
                         on.py", line 615, in run_migrations                
                             for step in                                    
                         self._migrations_fn(heads, self):                  
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/command.py",             
                         line 279, in retrieve_migrations                   
                             revision_context.run_autogenerate(rev          
                         , context)                                         
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/autogenerate/ap          
                         i.py", line 570, in run_autogenerate               
                             self._run_environment(rev,                     
                         migration_context, True)                           
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/autogenerate/ap          
                         i.py", line 591, in _run_environment               
                             raise util.CommandError("Target                
                         database is not up to date.")                      
                         alembic.util.exc.CommandError: Target              
                         database is not up to date.                        
                                                                            
                         During handling of the above exception,            
                         another exception occurred:                        
                                                                            
                         Traceback (most recent call last):                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1967, in _exec_single_context            
                             self.dialect.do_execute(                       
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/defau          
                         lt.py", line 924, in do_execute                    
                             cursor.execute(statement, parameters)          
                         sqlite3.OperationalError: table                    
                         _alembic_tmp_flow already exists                   
                                                                            
                         The above exception was the direct cause           
                         of the following exception:                        
                                                                            
                         Traceback (most recent call last):                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/starlette/routing.py",           
                         line 732, in lifespan                              
                             async with self.lifespan_context(app)          
                         as maybe_state:                                    
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/contextlib.py", line 199, in                   
                         __aenter__                                         
                             return await anext(self.gen)                   
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/main.py", line          
                         50, in lifespan                                    
                             initialize_services(fix_migration=fix          
                         _migration,                                        
                         socketio_server=socketio_server)                   
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/utils          
                         .py", line 166, in initialize_services             
                             raise exc                                      
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/utils          
                         .py", line 164, in initialize_services             
                             initialize_database(fix_migration=fix          
                         _migration)                                        
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/datab          
                         ase/utils.py", line 52, in                         
                         initialize_database                                
                             raise exc                                      
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/datab          
                         ase/utils.py", line 32, in                         
                         initialize_database                                
                             database_service.run_migrations(fix=f          
                         ix_migration)                                      
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/services/datab          
                         ase/service.py", line 174, in                      
                         run_migrations                                     
                             command.upgrade(alembic_cfg, "head")           
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/command.py",             
                         line 403, in upgrade                               
                             script.run_env()                               
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/script/base.py"          
                         , line 583, in run_env                             
                             util.load_python_file(self.dir,                
                         "env.py")                                          
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/util/pyfiles.py          
                         ", line 95, in load_python_file                    
                             module = load_module_py(module_id,             
                         path)                                              
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/util/pyfiles.py          
                         ", line 113, in load_module_py                     
                             spec.loader.exec_module(module)  #             
                         type: ignore                                       
                           File "<frozen                                    
                         importlib._bootstrap_external>", line              
                         883, in exec_module                                
                           File "<frozen importlib._bootstrap>",            
                         line 241, in _call_with_frames_removed             
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/alembic/env.py          
                         ", line 97, in <module>                            
                             run_migrations_online()                        
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/alembic/env.py          
                         ", line 91, in run_migrations_online               
                             context.run_migrations()                       
                           File "<string>", line 8, in                      
                         run_migrations                                     
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/runtime/environ          
                         ment.py", line 948, in run_migrations              
                             self.get_context().run_migrations(**k          
                         w)                                                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/runtime/migrati          
                         on.py", line 627, in run_migrations                
                             step.migration_fn(**kw)                        
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/langflow/alembic/versio          
                         ns/3bb0ddf32dfb_add_unique_constraints_pe          
                         r_user_in_flow_.py", line 27, in upgrade           
                             with op.batch_alter_table("flow",              
                         schema=None) as batch_op:                          
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/contextlib.py", line 142, in __exit__          
                             next(self.gen)                                 
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/operations/base          
                         .py", line 398, in batch_alter_table               
                             impl.flush()                                   
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/operations/batc          
                         h.py", line 164, in flush                          
                             batch_impl._create(self.impl)                  
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/operations/batc          
                         h.py", line 448, in _create                        
                             op_impl.create_table(self.new_table)           
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/ddl/impl.py",            
                         line 366, in create_table                          
                             self._exec(schema.CreateTable(table))          
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/alembic/ddl/impl.py",            
                         line 207, in _exec                                 
                             return conn.execute(construct,                 
                         multiparams)                                       
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1418, in execute                         
                             return meth(                                   
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/sql/ddl.py",          
                          line 180, in _execute_on_connection               
                             return connection._execute_ddl(                
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1529, in _execute_ddl                    
                             ret = self._execute_context(                   
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1846, in _execute_context                
                             return self._exec_single_context(              
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1986, in _exec_single_context            
                             self._handle_dbapi_exception(                  
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 2353, in                                 
                         _handle_dbapi_exception                            
                             raise                                          
                         sqlalchemy_exception.with_traceback(exc_i          
                         nfo[2]) from e                                     
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/base.          
                         py", line 1967, in _exec_single_context            
                             self.dialect.do_execute(                       
                           File                                             
                         "/opt/anaconda3/envs/langflow/lib/python3          
                         .10/site-packages/sqlalchemy/engine/defau          
                         lt.py", line 924, in do_execute                    
                             cursor.execute(statement, parameters)          
                         sqlalchemy.exc.OperationalError:                   
                         (sqlite3.OperationalError) table                   
                         _alembic_tmp_flow already exists                   
                         [SQL:                                              
                         CREATE TABLE _alembic_tmp_flow (                   
                                 name VARCHAR NOT NULL,                     
                                 description VARCHAR,                       
                                 icon VARCHAR,                              
                                 icon_bg_color VARCHAR,                     
                                 is_component BOOLEAN,                      
                                 updated_at DATETIME,                       
                                 id CHAR(32) NOT NULL,                      
                                 data JSON,                                 
                                 user_id CHAR(32),                          
                                 folder_id CHAR(32),                        
                                 endpoint_name VARCHAR,                     
                                 PRIMARY KEY (id),                          
                                 CONSTRAINT flow_folder_id_fkey             
                         FOREIGN KEY(folder_id) REFERENCES folder           
                         (id),                                              
                                 CONSTRAINT fk_flow_user_id_user            
                         FOREIGN KEY(user_id) REFERENCES user               
                         (id),                                              
                                 CONSTRAINT                                 
                         unique_flow_endpoint_name UNIQUE                   
                         (user_id, endpoint_name),                          
                                 CONSTRAINT unique_flow_name                
                         UNIQUE (user_id, name),                            
                                 UNIQUE (id)                                
                         )                                                  
                                                                            
                         ]                                                  
                         (Background on this error at:                      
                         https://sqlalche.me/e/20/e3q8)                     
                                                                            
                ERROR    2024-06-11 11:59:19 - ERROR    - on -      on.py:59
                         Application startup failed. Exiting.               

[06/11/24 11:59:19] ERROR 2024-06-11 11:59:19 - ERROR - glogging.py:272
glogging - Worker (pid:1427) exited
with code 3
ERROR 2024-06-11 11:59:19 - ERROR - glogging.py:272
glogging - Shutting down: Master
ERROR 2024-06-11 11:59:19 - ERROR - glogging.py:272
glogging - Reason: Worker failed to
boot.

`

@dosubot dosubot bot added the bug Something isn't working label Jun 11, 2024
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dosubot bot commented Jun 11, 2024

Hey @NeoVand! I'm here to help you with any bugs, questions, or contributions while you wait for a human maintainer. Let's tackle this together!

To resolve the error related to the temporary table (_alembic_tmp_flow) already existing in the SQLite database when attempting to run Langflow (version v1.0.0a50), you can modify the Alembic migration script to handle the existence of the temporary table. Here is an updated version of the upgrade function that includes a check for the existence of the temporary table and drops it if it exists:

def upgrade() -> None:
    conn = op.get_bind()
    inspector = Inspector.from_engine(conn)  # type: ignore

    # Check if the temporary table exists and drop it if it does
    if inspector.has_table('_alembic_tmp_flow'):
        op.execute('DROP TABLE _alembic_tmp_flow')

    # ### commands auto generated by Alembic - please adjust! ###
    indexes_names = [index["name"] for index in inspector.get_indexes("flow")]
    constraints_names = [constraint["name"] for constraint in inspector.get_unique_constraints("flow")]
    with op.batch_alter_table("flow", schema=None) as batch_op:
        if "ix_flow_endpoint_name" in indexes_names:
            batch_op.drop_index("ix_flow_endpoint_name")
            batch_op.create_index(batch_op.f("ix_flow_endpoint_name"), ["endpoint_name"], unique=False)
        if "unique_flow_endpoint_name" not in constraints_names:
            batch_op.create_unique_constraint("unique_flow_endpoint_name", ["user_id", "endpoint_name"])
        if "unique_flow_name" not in constraints_names:
            batch_op.create_unique_constraint("unique_flow_name", ["user_id", "name"])

    # ### end Alembic commands ###

This modification ensures that if the temporary table _alembic_tmp_flow already exists, it will be dropped before proceeding with the rest of the migration [1].

To continue talking to Dosu, mention @dosu.

@AndrewSun1010
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you can delete langflow.db or langflow-pre.db

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