Commits

Commits on May 15, 2022

Remove / from kernel_name
Avsecz
committedMay 15, 2022

Commits on Apr 15, 2022

Merge pull request #36 from albertjstanley/deadlock-fix
Avsecz
committedApr 15, 2022

Commits on Feb 23, 2022

Removed multiprocessing during training
albertjstanley
committedFeb 23, 2022

Commits on Jul 7, 2021

Merge pull request #28 from mlweilert/track_util_expand
mlweilert
committedJul 7, 2021
Merge branch 'master' into track_util_expand
mlweilert
committedJul 7, 2021

Commits on Jul 6, 2021

Update: Added partial ChIP-seq functionality with the chip-nexus-analysis portion of modisco
mlweilert
committedJul 6, 2021

Commits on Jun 4, 2021

Update losses.py
Avsecz
committedJun 4, 2021
Update losses.py
Avsecz
committedJun 4, 2021

Commits on Jun 2, 2021

Update: added flip-strand option to bigwig export
mlweilert
committedJun 2, 2021

Commits on Apr 5, 2021

Only write preds.neg if it exists.
Avsecz
committedApr 5, 2021

Commits on Mar 28, 2021

Update pysam version
Avsecz
committedMar 28, 2021

Commits on Mar 14, 2021

freeze several package version. Tests passed locally in a new conda env.
Avsecz
committedMar 14, 2021

Commits on Feb 27, 2021

Pin h5py to 2.9.0 version
Avsecz
committedFeb 27, 2021

Commits on Feb 9, 2021

Fix: Updated setup.py to not require pprint--was causing installation issues.
mlweilert
committedFeb 9, 2021

Commits on Aug 31, 2020

Merge pull request #17 from an1lam/patch-1
Avsecz
committedAug 31, 2020
Remove pprint from setup.py
an1lam
committedAug 31, 2020

Commits on Jul 12, 2020

Merge pull request #14 from an1lam/patch-1
Avsecz
committedJul 12, 2020
Update README.md
an1lam
committedJul 12, 2020

Commits on Jul 5, 2020

Bump version: 0.0.22 → 0.0.23
Avsecz
committedJul 5, 2020
Bump version: 0.0.21 → 0.0.22
Avsecz
committedJul 5, 2020
Require jupyter_client>=6.1.2. Closes #13
Avsecz
committedJul 5, 2020

Commits on Jun 11, 2020

Fix: SeqClassification contrib score writing matches other contrib score file formats. metadata/range is now convention (instead of metadata/ranges)
mlweilert
committedJun 11, 2020

Commits on May 28, 2020

Fix: Enabled to run for single-task models.
mlweilert
committedMay 28, 2020
Fix: Enabled to support BPNet models with only a single task.
mlweilert
committedMay 28, 2020
Merge pull request #12 from mlweilert/master
mlweilert
committedMay 28, 2020

Commits on May 1, 2020

Fix: Updated paths of get_ranges from ContribFile
mlweilert
committedMay 1, 2020

Commits on Feb 11, 2020

Merge pull request #11 from kundajelab/revert-10-master
mlweilert
committedFeb 11, 2020
Revert "Fix: .h5 contrib file now is compatible with ContribFile.get_profile()"
mlweilert
committedFeb 11, 2020
Merge pull request #10 from mlweilert/master
mlweilert
committedFeb 11, 2020
Fix: Updated again.
mlweilert
committedFeb 11, 2020
Fix: Contrib relied on old .h5 strcture. Updated.
mlweilert
committedFeb 11, 2020
Merge pull request #9 from mlweilert/master
mlweilert
committedFeb 11, 2020
Fix: Contrib get_ranges .h5 parsing corrected.
mlweilert
committedFeb 11, 2020

Commits on Feb 4, 2020

Fix: export-bw now allows single pred_summary input
mlweilert
committedFeb 4, 2020

Commits on Jan 14, 2020

Convert to string when checking for the suffix.
Avsecz
committedJan 14, 2020