Tidy up dependency inclusions in various files

[andreaslindner]

In PR #135 we encapsulate the library inclusions in the lifter libraries to put an end to the era of its binding pollution throughout HolBA (i.e., everything that happens to be built afterward). This quickly carried out action results in the addition of a fixed block of library inclusions to many files to reintroduce dependencies.

We need to clean those blocks up. Independently of this issue, we should clean them up once we encounter one when working with one of the affected libraries or scripts that contains this block.