Commits

Commits on Aug 25, 2021

Merge pull request CRG-CNAG#28 from kojix2/patch-1
pditommaso
committedAug 25, 2021
Fix build badge in README.md
kojix2
committedAug 25, 2021

Commits on Aug 24, 2021

Merge pull request CRG-CNAG#27 from kojix2/kojix2-star-2-pass
pditommaso
committedAug 24, 2021

Commits on Aug 21, 2021

Use option instead of genome regeneration in STAR for 2-pass mapping
kojix2
committedAug 21, 2021
Merge pull request CRG-CNAG#25 from kojix2/kojix2-github-actions
pditommaso
committedAug 21, 2021
Fix ci
kojix2
committedAug 21, 2021
Removed .travis.yml
kojix2
committedAug 21, 2021
Use github actions
kojix2
committedAug 21, 2021

Commits on Aug 20, 2021

Merge pull request CRG-CNAG#24 from kojix2/patch-1
pditommaso
committedAug 20, 2021
Fix a typo
kojix2
committedAug 20, 2021

Commits on Nov 1, 2020

Update container to quay.io
pditommaso
committedNov 1, 2020

Commits on Aug 10, 2020

Fix test and update travis file
pditommaso
committedAug 10, 2020
Add dockerOptions config
pditommaso
committedAug 10, 2020
Rename blacklist to denylist
pditommaso
committedAug 10, 2020
Update readme
pditommaso
committedAug 10, 2020
Add notice file with third parties sw credits
pditommaso
committedAug 10, 2020
Update Docker file with gatk4
pditommaso
committedAug 10, 2020
Remove unused gatk params
pditommaso
committedAug 10, 2020
Merges CRG-CNAG#15
pditommaso
committedAug 10, 2020

Commits on Aug 8, 2020

Merge GATK4 based implementation
pditommaso
committedAug 8, 2020
Remove circle ci build file
pditommaso
committedAug 8, 2020
Merge CalliNGS DSL2 version
pditommaso
committedAug 8, 2020

Commits on Jun 15, 2020

Update batch config
pditommaso
committedJun 15, 2020
Fix config
pditommaso
committedJun 15, 2020

Commits on Mar 1, 2020

Disable ANSI log
pditommaso
committedMar 1, 2020
Upgrade script to NF 20.01.0
pditommaso
committedMar 1, 2020

Commits on Jun 15, 2019

Update nextflow.config
pditommaso
committedJun 15, 2019

Commits on Feb 3, 2019

Added resource labels
pditommaso
committedFeb 3, 2019

Commits on Oct 16, 2018

Added gitattributes [ci skip]
pditommaso
committedOct 16, 2018
Bumped to MPL2.0 license
pditommaso
committedOct 16, 2018

Commits on Jun 16, 2018

Update travis config
pditommaso
committedJun 16, 2018

Commits on Jun 4, 2018

Added Travis build file
pditommaso
committedJun 4, 2018

Commits on Apr 11, 2018

Update README.md
pditommaso
committedApr 11, 2018

Commits on Jan 29, 2018

Update readme file
pditommaso
committedJan 29, 2018

Commits on Jan 19, 2018

Updated gatk4 path
pditommaso
committedJan 19, 2018