PhD student in the @SchapiroLabor group working on pipelines and tools to accelerate Spatial omic analyses.
Nextflow Ambassador.
- Heidelberg, Germany
- https://orcid.org/0009-0009-8245-9846
- in/krešimir-beštak-a027ab211
Highlights
- Pro
Popular repositories Loading
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QuPath_Annotation_to_Quantification_file
QuPath_Annotation_to_Quantification_file PublicForked from josenimo/06_QuPath_Annotation_to_AnnData
annotate cells wether they are inside a QuPath annotation. Expects QuPath geojson export from the same image.
Jupyter Notebook 1
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mcmicro_hackathon_2022
mcmicro_hackathon_2022 PublicForked from SchapiroLabor/mcmicro_hackathon_2022
Description for the Background subtraction module from the MCMICRO hackathon 2022
HTML
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mcmicro-ilastik
mcmicro-ilastik PublicForked from labsyspharm/mcmicro-ilastik
Ilastik segmentation module for mcmicro
Python
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nf_molkart
nf_molkart PublicForked from nf-core/molkart
Fork for working on first release of nf-core/molkart
Nextflow
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