error after file submission

[amitpande74]

Hi,
when I press the submit button the app crashes and it complains:
[1] "server-sampleplots-update-samples"
Warning: Error in [: subscript out of bounds
94: extract_count_data [fun-input-analyze-data.R#30]
93: analyze_expression_data [fun-input-analyze-data.R#94]
89: eventReactiveHandler [server-inputdata.R#122]
45: analyzeDataReactive
44: [server-filterdata.R#56]
1: runApp

My input format is according to what has been described in the instructions. Is it because I have zero in some replicates.

[jminnier]

Hi @amitpande74, thanks for submitting this. It shouldn't have to do with 0's, that happens a lot with rna-seq data and the software should deal with it fine. Since the error is in the extract_count_data() function, it might have to do with the sample names, or the gene id columns. Could you either post here or send me the first few lines (including header) of your data, just so I can see what kind of data is throwing this error? Thanks!