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Visium HD support #182

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revolvefire opened this issue Jun 28, 2024 · 1 comment
Open

Visium HD support #182

revolvefire opened this issue Jun 28, 2024 · 1 comment

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@revolvefire
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Thanks for the wonderful tool.

Would there be a plan to support Visium HD anytime soon?

Thanks!

@xiweiwu
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xiweiwu commented Jul 3, 2024

I have the same question. It looks like optimal parameters need to be figured out for Visium HD.

I was able to go through a few steps, by setting conversion.factor = 1 and spot.size = 8, However, I don't think the result is reasonable when using the following parameters to identify interactions.
computeCommunProb(data, type = "truncatedMean", trim = 0.1,
distance.use = TRUE, interaction.length = 200, scale.distance = 0.01)

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