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Can one extract the ligand-receptor pairs as a list? #168

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tkapello opened this issue Jun 12, 2024 · 1 comment
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Can one extract the ligand-receptor pairs as a list? #168

tkapello opened this issue Jun 12, 2024 · 1 comment

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@tkapello
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Hi,

I was wondering whether it is possible to save the significant ligand-receptor pairs and statistics/communication probability from a cell-cell interaction as a table or a list for further study.

Thanks in advance!

@sqjin
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sqjin commented Jun 13, 2024

@tkapello Please the tutorial on Extract the inferred cellular communication network as a data frame.
df.net <- subsetCommunication(cellchat) returns a data frame consisting of all the inferred cell-cell communications at the level of ligands/receptors. Set slot.name = "netP" to access the the inferred communications at the level of signaling pathways

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