Stars
Finding gene expression states in scRNA-seq data
Positron, a next-generation data science IDE
Alfred script filter for selecting audio devices
Alfred workflow for Obsidian note-taking app. Open vaults and files in Obsidian.
Command line scientific data management tool
A template repository for how I structure my scientific research
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
A GitHub action to create an issue using content from a file
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
A library of standard population genetic models
R & stats illustrations by @allison_horst
Run Nextflow on AWS Batch (Squared)
A book covering the fundamentals of data visualization
simple examples of using supervised machine learning for population genetics inference
Materials for a 2-day introduction to the bash language, the Linux OS, and high-performance computing.
Materials for short, half-day workshops
Putting machine learning in the hands of cancer biologists
A very similar style to the original tufte hugo theme but with a few modifications. Used in my blogdown blog.
A repository of Jupyter/IPython notebooks with the slides and code examples for my machine learning class.
RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension
Applied Computational Genomics Course at UU: Spring 2020