Implementations of various VAE-based semi-supervised and generative models in PyTorch

Official Python client for accessing ChEMBL API

A tool for detecting somatic variants in single cell data

Script to automatically create and run IGV snapshot batchscripts

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …

Software program for checking sample matching for NGS data

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ …

A mosaic detecting software based on phasing and random forest

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

Somatic structural variant caller for long-read data

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

Python package and routines for merging VCF files

Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data

A python library for single cell whole-genome sequencing quality evaluation

DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.