Annotation Pipeline for NLR genes

Toolset for SV simulation, comparison and filtering

NLR-Annotator upload

plot genomic characteristics and collinearity

DNA序列比对结果 可视化展示工具

An accurate GFF3/GTF lift over pipeline

Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)

Make colorful identity heatmaps of genomic sequence

Single-cell Hi-C data analysis toolbox

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Genome assembly evaluation tool

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

k-mer based assembly evaluation

A pipeline for nucleus organelle gene (NOG) map construction

Multi-level visualization of genomic statistical variables on rectangular chromosomes

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

A collection of tools for Hi-C data analysis

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

De novo assembler for single molecule sequencing reads using repeat graphs

A single molecule sequence assembler for genomes large and small.

An efficient assembly tool for plant mitochondrial genome