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DESCRIPTION
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DESCRIPTION
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Package: RforProteomics
Type: Package
Title: Companion package to the 'Using R and Bioconductor for
proteomics data analysis' publication
Version: 1.23.1
Authors@R: c(person("Laurent", "Gatto", role=c("aut", "cre"),
email="[email protected]"),
person("Sebastian", "Gibb", role="ctb",
email="[email protected]"),
person("Vlad", "Petyuk", role="ctb",
email="[email protected]"),
person('Thomas', 'Pedersen Lin', role='ctb',
email='[email protected]'))
Maintainer: Laurent Gatto <[email protected]>
Depends:
MSnbase (>= 2.5.3)
Imports:
R.utils,
shiny,
biocViews,
BiocManager
Suggests:
AnnotationDbi,
rpx,
DT,
knitr,
rmarkdown,
BiocStyle,
mzR,
xcms,
msdata,
isobar,
MALDIquant (>= 1.12),
MALDIquantForeign,
readBrukerFlexData,
rTANDEM,
synapter,
synapterdata,
IPPD,
Rdisop,
OrgMassSpecR,
SummarizedExperiment,
BRAIN,
rols,
hpar,
GO.db,
org.Hs.eg.db,
e1071,
biomaRt,
RColorBrewer,
ggplot2,
reshape2,
xtable,
lattice,
mzID,
pRoloc,
pRolocdata,
MSGFplus,
MSnID,
msmsTests,
msmsEDA,
DEP,
corrplot,
beanplot,
Heatplus,
gplots,
VennDiagram,
protViz,
genefilter,
plotly,
gridExtra,
dplyr,
lubridate
Enhances: cleaver
Description: This package contains code to illustrate the 'Using R and
Bioconductor for proteomics data analysis' and
'Visualisation of proteomics data using R and
Bioconductor' manuscripts. The vignettes describe the
code and data needed to reproduce the examples and
figures described in the paper and functionality for
proteomics visualisation. It also contain various
function to discover R software for mass spectrometry and
proteomics.
URL: http:https://lgatto.github.com/RforProteomics/
biocViews: ExperimentData, MassSpectrometryData, ReproducibleResearch
License: Artistic-2.0
VignetteBuilder: knitr
Author: Laurent Gatto [aut, cre], Thomas Lin Pedersen [ctb],
Sebastian Gibb [ctb], Vlad Petyuk [ctb]
RoxygenNote: 6.1.1