-
Notifications
You must be signed in to change notification settings - Fork 22
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
TOGA stops after CESAR checking results #122
Comments
Seems like |
Hello, I've also encountered this same TypeError crashing the program at this step. Is there a recommend course of action on how to address this? Thank you! |
Hi everyone,
I tried to run TOGA using my data and the following command (./toga.py human_mesbid/human.mesbid.final.chain human_mesbid/hg38.wgEncodeGencodeCompV34.bed human_mesbid/hg38.2bit human_mesbid/mesbid.modified.2bit --kt --pn human_mesbid_out -i human_mesbid/hg38.wgEncodeGencodeCompV34.isoforms.txt --u12 human_mesbid/hg38.U12sites.tsv --ms --cjn 32 --cb 10,100) and everything seams to work fine, but I keep having the following error message:
I tested with the same command (just changing to -cb 3,5) in the test data and it did not return any error.
I also attached the log file
toga_2023_11_14_at_18_01.log
If there is any command to continue the analysis, from this step on please let me know
Thank you in advance
The text was updated successfully, but these errors were encountered: