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Commits on Apr 2, 2022

• fixing diam_labels and flow_threshold

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• fixing issues with model retraining

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• removing params from state dict for now

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• fixing cuda bug and adding custom model box

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• removing mxnet and adding model zoo

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Commits on Mar 1, 2022

• Add files via upload

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Commits on Feb 9, 2022

• fixing bugs with empty masks, add warning for no channel spec, reverting normalization in gui, fixing omni bugs

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Commits on Feb 8, 2022

• adding more options for GUI training

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Commits on Feb 1, 2022

• infinite track_changes

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Commits on Jan 30, 2022

• fixing unet and changing layer update

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Commits on Jan 26, 2022

• Update README.md

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Commits on Jan 25, 2022

• Created using Colaboratory

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• speeding up command line

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• Merge branch 'puisheelee-fix_stitch_threshold_bug'

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• Merge branch 'fix_stitch_threshold_bug' of https://github.com/puisheelee/cellpose into puisheelee-fix_stitch_threshold_bug

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• scaling up overlay

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• fixing bug with show_segmentation

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• fixing bugs with gui and saving _seg.npy for loading in gui

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Commits on Jan 24, 2022

• actually implementing min_train_masks

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• bug in labels_to_flows labels size

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• changed gui to use omnipose.core.compute_masks

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• adding min_train_masks option, refactoring out some omnipose functions

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• bug with empty masks

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Commits on Jan 23, 2022

• bug with images with very low pixel ranges + stopping constant model reloading in loop

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• adding ability to train from scratch

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• changing resample defaults

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Commits on Jan 22, 2022

• nimg per epoch added

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Commits on Jan 21, 2022

• fixing bug with model saving during training

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• adding optional _masks.tif loading

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• fixing bug with new model loading

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• training bug

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Commits on Jan 20, 2022

• fixed bug with mask deletion

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• bug in loading _seg.npy and changed masks_to_flows_gpu to use same centers as masks_to_flows_cpu

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• adding R/G/B key functions

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Commits on Jan 19, 2022

• adding track changes in manual_changes key in _seg.npy

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