A python interface to the SAGE search engine for mass spectrometry proteomics

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

Missing data visualization module for Python.

A note of building The GNU C Library(https://www.gnu.org/software/libc/)

SPR Analysis Web App

Python3 library to manage remote machines and perform file operations over SSH

A Medical Visualisation Add-On for Blender

Python regular expressions made easy

Code for the manim-generated scenes used in 3blue1brown videos

Lectures for INFO8010 Deep Learning, ULiège

Scripts for UCSF Chimera and PyChimera, for data analysis and graphics generation

A Python package for extracting protein sequence features

Colorblind-friendly, perceptually uniform palettes for chimerax

Stress-Free Descriptive Tables in Python

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

Contact map denoising using GANs

These are programs that deal with anisotropy (both resolution and sampling)

Atomic model based landscape analysis for cryo-EM

Tools for user-free preprocessing of cryo-EM datasets

Source code for molecular graphics program UCSF ChimeraX

FauxPilot - an open-source alternative to GitHub Copilot server

Desktop application for colouring/shading sequence alignments

Solve puzzles. Learn CUDA.

Python scripts for renumbering PDB files according to primary sequence (or whichever sequence makes sense)

New script to follow Relion projects in a browser!

Foldseek enables fast and sensitive comparisons of large structure sets.

Listing of papers about machine learning for proteins.